Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0690 ATGCCGCCGGCTCTGATGAACCCGCTGATGCCGCCGCCGCCACCTCCGTCGGTGTCGGTGTCCGCGCCGCCGGAGCTTGAAGGCTCCGACGATGTTTCCGGGAGATCGGTGACTCAAAAGAGGCGATTCGGTGATCTGAGAGGGTTGCAGTGGCGTGTTGATCTTGGGGTTTTGCCTTCAGAGTCTTCAACTTCCATTGATGATCTTCGTAGGGTCACCGCTGACTGTAGAAGGAGGTATGCGAATCTGAGAAGGCGTCTTCTGGTTGAACCGCATATCCCGAAGGATGGAAGTAACTCACCCGATCTTACCATGGATAATCCACTTTCACAAAATCCAGATAGTACATGGAGTCGCTTTTTCCGTAATGCGGAGCTAGAGAGAATGGTTGATCAGGATTTATCACGTTTATATCCAGAACATGGGAATTATTTCCAGACACCAGGATGCCAAGGCATTTTAAGACGCATTTTATTACTTTGGTGTCTCAGGCACCCAGAATGTGGTTATAGACAAGGAATGCACGAGTTACTTGCTCCTCTACTTTATGTTCTCCAAGTTGATGTGGAGCGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATATCTTCACCGACAAATTTGATGGCCTTCTATATCAGGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTCAAGACTTGCTGGAGGATGAAATTGGCTCTCATGGAAATGCAAAAGTCAAAAGTCTTGATGAGCTTGATCCTGCATTACAGACCATTGTATTGCTGAGTGATGCTTATGGAGCTGAAGGTGAACTGGGCATTGTTTTATCTGAGAAATTCATGGAACATGATGCTTATTGCATGTTTGATGCTTTAATGAGTGGTGTCCGTGGTTCAGTTGCGATGGCCGATTTCTTCTCTTCCTTCCCTGTAGCAGGGTCGCAAACTGGCCTGCCTCCTGTTATTGAAGCTTCTACTGCATTGTATCATTTGCTGTGTCTTGTGGATTCATCTCTGTATAGCCATCTTTTGGATCTTGGTGTTGAACCCCAATACTTTTCTCTCCGATGGTTGCGAGTTCTATTCGGACGTGAGTTTTCACTTGACAATCTATTGATAATCTGGGATGAGATCTTTGCATCGGATAATAGTAAAGTTGAAAAAAGTGTTGATGACAACATAGACTGGGGTTTGAGGATTTTGCATTCTCCTCGTGGAGCATTTATTGCAGCTATGGCTGTTGCAATGCTACTTCATTTAAGATCTTCACTGCTTGCTACCGAAAATCCTACCACCTGTCTTCAGAGATTATTAAACTTTCCTGAAAACATTAATATTAAAAAGCTGCTGGAGAAGGCCAAATCATTGCAAGCTCGTGCACTAAGTGTTGATATTTCTTCTCCATCACCTTTGATTATAGGATATCATCTCCAAAGTAAATCAGTTATGACGCGATCTCAGACCCTTCCTTCTGAAACTGTGTCTCCAAAAACTCCTGTAAATTTGTTAACTGACAGCTACTGGGAAGAAAAATGGAGGGTTGCACATGAGGCTGAAGAACTTAAGCAAGATGGTATCGAACAACAGATTCCGACTCGGAAAAAGGGCTGGACAGAAAAGGTAAAAAACACACTGAGAAGAGCGGGATCTGATCCACCACCTTCAAGGATTAAGAATGGCAAAAAGGAATCTAAGGTGGTTAGGCGAAACATATTGGAAGCGCTTCATAAGGCACTTGGACCTGAGGAAGAAGCAGAACAAATGGATTGCCATGAAATCCTATGCAAGCAGGAAAATATTTCTGAAGCAGCTGAAGGTGTGCAGCAAAATGATAACTCTAAAGGCGACAACAGTTACTCATCTGATGATAGATGTCCAAGTGGAAATACAGGGATAGAGGAAAGCTCCTCTGTATATTCTGACTCAACTAGCCCGCCTAATGAGGCCAATTATCATGAAATTACCTCGCAGGGAAGTAGTGTTGCCTCTAATTTATATCTTGACGAATGCGATGAAACTGCAGATACCAGTCTCAGTGATCCACCTCTTCCAGTCTCTGATCATCCTGAGAGCATACCTGAAACATCAGAGTCCACTGATGTTGATGTTGATAAATCTGAGAACATACCTCAGATGTCAGGGTGCAATAATAATGATCCAGGAAATTCTGCTACACATCCCAAGGAGAAAAAGCAGAATAAATTTCAGTGGTTTTGGAAGTTTGGACGGAATACTGTTGAGGGTATATCGGGGAAAGTAGGAGCTGCTTCTGAACCTACAAAATCCACCAGCAGCTGTAGTAACCAAAGTAATTCGCAACCACCTGTCTCTTCTACCACCAGTGAGCATTTCACTTCTGTTAGTAGCAAAGGAGATTCTGTAGACCAGAATGTGATGGGCACTTTGAAGAATATTGGACAGTCTATGCTTGACCATATCCAGGTAATTGAATCTGTTTTCCAACAAGACAGGAACCAGGGAGTCTCAGTGGAGAACTTATCTAAAAATATTCTTGTTGGCAAAGGGCAGGTTACTGCCATGGCAGCTCTCAAGGAGCTTCGGAAGATTAGCAATATTCTGTCTGAGATGTTCTGGAGATGA 2589 0.4334 MPPALMNPLMPPPPPPSVSVSAPPELEGSDDVSGRSVTQKRRFGDLRGLQWRVDLGVLPSESSTSIDDLRRVTADCRRRYANLRRRLLVEPHIPKDGSNSPDLTMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDVERLSEVRKLYEDIFTDKFDGLLYQENDLSYSFDFRKSQDLLEDEIGSHGNAKVKSLDELDPALQTIVLLSDAYGAEGELGIVLSEKFMEHDAYCMFDALMSGVRGSVAMADFFSSFPVAGSQTGLPPVIEASTALYHLLCLVDSSLYSHLLDLGVEPQYFSLRWLRVLFGREFSLDNLLIIWDEIFASDNSKVEKSVDDNIDWGLRILHSPRGAFIAAMAVAMLLHLRSSLLATENPTTCLQRLLNFPENINIKKLLEKAKSLQARALSVDISSPSPLIIGYHLQSKSVMTRSQTLPSETVSPKTPVNLLTDSYWEEKWRVAHEAEELKQDGIEQQIPTRKKGWTEKVKNTLRRAGSDPPPSRIKNGKKESKVVRRNILEALHKALGPEEEAEQMDCHEILCKQENISEAAEGVQQNDNSKGDNSYSSDDRCPSGNTGIEESSSVYSDSTSPPNEANYHEITSQGSSVASNLYLDECDETADTSLSDPPLPVSDHPESIPETSESTDVDVDKSENIPQMSGCNNNDPGNSATHPKEKKQNKFQWFWKFGRNTVEGISGKVGAASEPTKSTSSCSNQSNSQPPVSSTTSEHFTSVSSKGDSVDQNVMGTLKNIGQSMLDHIQVIESVFQQDRNQGVSVENLSKNILVGKGQVTAMAALKELRKISNILSEMFWR* 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0690 862 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 110 295 - -
Amo04g0690 862 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 45 338 IPR035969 -
Amo04g0690 862 MobiDBLite consensus disorder prediction 752 791 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 749 791 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 601 652 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 669 725 - -
Amo04g0690 862 Pfam Rab-GTPase-TBC domain 127 186 IPR000195 -
Amo04g0690 862 Pfam Rab-GTPase-TBC domain 277 378 IPR000195 -
Amo04g0690 862 ProSiteProfiles TBC/rab GAP domain profile. 41 378 IPR000195 -
Amo04g0690 862 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 790 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 541 560 - -
Amo04g0690 862 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 790 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 1 21 - -
Amo04g0690 862 Coils Coil 66 86 - -
Amo04g0690 862 SMART tbc_4 38 408 IPR000195 -
Amo04g0690 862 Gene3D - 317 459 - -
Amo04g0690 862 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 314 453 IPR035969 -
Amo04g0690 862 MobiDBLite consensus disorder prediction 1 39 - -
Amo04g0690 862 MobiDBLite consensus disorder prediction 701 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0690 Amo-Chr4 20210270 20215196 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0690 K18469 - gmx:100812967 1125.92