Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0616 ATGGCAACCGAAAGTCCAATTAGAATTTCAGAAGCTGGGGGTAAGTGGCCCTCTCTTAAGGAGGGTTCTACTTTTGGTTCACCAGCTCGTAACATGGCAACAGAAGATTTAGGTATACTTGTACAGGGGCATAGATTCCATGGTAGTGGAAGGGATATGGCACCCAATCGCAGTGGAAGTGCTCCTCCCAGTATGGAAGGCTCATTTCTTGCTATAGAAAACTTGTTATCCCAACAGAACACCACTCAGAATGCAAGCTTGGCAACTTTGAGCAGAGCTATGCAAAAATATGACTCTGAGGAACAATTACGAGCCGATCCAGCTTATTTGGCATATTACAATTCCAATGTCAACCTAAACCCTAGGCTTCCTCCTCCTCTTATCTCTCGGGAAAATCGCCATCATATTAGCAATTTTAGGAATAATTGGGGATTTTCTTCTGCAGATGATAGCAGTAAAATTTCTTTTCATTTACCACAAGGAACTCTTGCAACGCATAGGGAGGAGTCTGAGGATGATTCACCGCAGCAGCCATATGATAATGAGCTAGTTAAGACAGATGGTCTATGGAGTAGACCAGATGCATCAGCATCATTACCGTCACAGTGCAAAAATATAGTTGACTCAATTCAGGAAGATTTCCCCCATACCATGTTACCTGTATATAGTAATTCTCATTCTGTCAGTCGTTGTGGACTGGCGGATGAACCAATTGACTTGGATGCTGTCTCCAGTTCTTCTCGTGATCCTCCTGTCCCTTCAGTCGAGGTTGGTAAACCCATTGTAGGTGCGGACGATATGAGGATGTCATCAAGTGCTGGTACCAACGCTCCTCTTGCAAGCTCATCATCTCTTGAATCCACTGGTAGCATGGGTATTAGTGACTTAGATGTTTCAATTGTGGAGTCTCAATTGAAGGCTTTAAGTGTATCTAATCTATCAAATTCAGAAAGCCCGAGTTATGAAGAAAAATGGAAGACTGATTACCAGAATAATTTAATGCAACAACAGATGTTCCAGCAACAAAACAATCCATGTGAAGTTCCCAATGCCAACTCTCAGAATGTGAATTCAGCCTACATTGTTAGAGAGCAGTTTCCTCATAATGCTAGCAAGTTCTCCTCTGATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCACTATATGCCACAGCAGCAGCAGCTTACATGACTTCACCAAATCCGTTCTACACTAATTTGCAGGCCTCAGGCATGTATACTCCACAATATGTTGGTGGATACACTATAAATCCCTCAGTTGTTCCTTCATATATTCCTGCATACCCTCCTCATGGTGCTGTACCATATATTGTTGATGGGGCTACTAGTTCCAGTTATACCCCAATGACACCAGGGCTTTCTGCTGGAGGAAGCATTTCACATGGAGCTGAAATGACACATGCAAACAAGTTCCCTGGGCAATACGGATTTACTATGCAGCCTTCTTTCACTGATCCTATGTACATGCAATATCACCAGCAGCCTTTTGTCGAGGGATATGGTGTTTCTGGTCATTTTGATCCAATGGCACCGAGGGCAAGTGGTGTTAGCCAGATTAGTCCTTTTGATTCACAAAAGAGGCCCACAAGTGGTGCTTATTTGGAAGATAAGAATTTACATCATCAGAGAAGTGGTGCAAATATGAACCTAAGAAGAGGAGGATTGACAATCCCCATCCCTAATTATTTTGGTCCGCCAACAAACATGGGTTATGTAATGCAGTATCCAAGTTCACCGCTTCCTTGTCCTGTTTTGCCTGGATACCCAGAAGGAAGTCCTAGCCTTCCAGGAGTAAGGAATGAGATGAAGCTTTCCCCAGCTTCTGGTAGAAATGGAGGCGTATTATCTGGATGGCAAGGACATAGATCCTTTGACAGTGCCCATGACCCGAAAATTGTTAATTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACACATTGTTGAATTTAGTGCTGATCAGCATGGGAGTCGATTTATACAGCAGAAGTTGGAAAGTTGCAGTGTTGAAGAGAAGGCATTGGTATTCAAAGAAGTTCTTCCACATGCTTCGAAGTTAATGACTGATGTATTTGGTAACTATGTAATACAGAAGTTTTTTGAGTATGGAAGCCCTGAACAGAGGAGGGAACTTGCTAGTCGACTAGGTGGTCAGATATTGCCTTTAAGTCTGCAGATGTATGGCTGCCGTGTAATCCAAAAGGCACTTGAGGTCATTGAACTTGAACAAAAAGCCCAGCTTGTTCGTGAGCTAGATGGACATGTTATGAGATGTGTACGTGATCAAAATGGGAATCATGTTATACAGAAATGCATTGAATCTATTCCAACCAAGAAAATTGCATTTATAATTTCTGCATTCCGTGGTCAAGTTGCTATTCTGTCAATGCACCCTTATGGTTGCCGAGTCATACAGAGAGTTCTAGAGCATTGTACGGATGAGATTCAGTGTCAGTTTATTGTGGATGAAATCTTAGAGTCTGTTTATGCACTTGCTCAAGATCAGTATGGTAATTATGTGACCCAGCATGTATTGGAGAGAGGAAAGGCTCAGGAAAGGAGCCAAATCATTAGCAAGCTATCAGGACATATTGTTCAATTAAGCCAGCATAAGTTCGCTTCAAATGTCATAGAGAAATGTTTAGAGTATGGAGATGCCACTGAACGGGAGTTGTTAATTTCCGAGATTATTGGACATGAAGAACGAAATGACAATTTATTGATCATGATGAAAGACCAATTCGCAAATTATGTGATCCAGAAGGTTATTGATATCTGTTCTGAAAATCAGCGAGTAATCTTGCTTTCTCACATCAGAGTTCATGCTCATGCTTTGAAGAAATACACTTACGGAAAACACATTGTGGCTCGGTTGGAACAGCAATTTGGAGAGGATCAAACATCCAGATCAGGATGA 2970 0.4199 MATESPIRISEAGGKWPSLKEGSTFGSPARNMATEDLGILVQGHRFHGSGRDMAPNRSGSAPPSMEGSFLAIENLLSQQNTTQNASLATLSRAMQKYDSEEQLRADPAYLAYYNSNVNLNPRLPPPLISRENRHHISNFRNNWGFSSADDSSKISFHLPQGTLATHREESEDDSPQQPYDNELVKTDGLWSRPDASASLPSQCKNIVDSIQEDFPHTMLPVYSNSHSVSRCGLADEPIDLDAVSSSSRDPPVPSVEVGKPIVGADDMRMSSSAGTNAPLASSSSLESTGSMGISDLDVSIVESQLKALSVSNLSNSESPSYEEKWKTDYQNNLMQQQMFQQQNNPCEVPNANSQNVNSAYIVREQFPHNASKFSSDVQPLLQSSGFTPPLYATAAAAYMTSPNPFYTNLQASGMYTPQYVGGYTINPSVVPSYIPAYPPHGAVPYIVDGATSSSYTPMTPGLSAGGSISHGAEMTHANKFPGQYGFTMQPSFTDPMYMQYHQQPFVEGYGVSGHFDPMAPRASGVSQISPFDSQKRPTSGAYLEDKNLHHQRSGANMNLRRGGLTIPIPNYFGPPTNMGYVMQYPSSPLPCPVLPGYPEGSPSLPGVRNEMKLSPASGRNGGVLSGWQGHRSFDSAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLESCSVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELASRLGGQILPLSLQMYGCRVIQKALEVIELEQKAQLVRELDGHVMRCVRDQNGNHVIQKCIESIPTKKIAFIISAFRGQVAILSMHPYGCRVIQRVLEHCTDEIQCQFIVDEILESVYALAQDQYGNYVTQHVLERGKAQERSQIISKLSGHIVQLSQHKFASNVIEKCLEYGDATERELLISEIIGHEERNDNLLIMMKDQFANYVIQKVIDICSENQRVILLSHIRVHAHALKKYTYGKHIVARLEQQFGEDQTSRSG* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0616 989 MobiDBLite consensus disorder prediction 1 30 - -
Amo04g0616 989 PANTHER PUMILIO HOMOLOG 5 45 982 - -
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 660 695 IPR001313 GO:0003723
Amo04g0616 989 MobiDBLite consensus disorder prediction 265 288 - -
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 877 912 IPR001313 GO:0003723
Amo04g0616 989 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 640 980 IPR033133 GO:0003723
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 841 876 IPR001313 GO:0003723
Amo04g0616 989 Gene3D - 641 985 IPR011989 -
Amo04g0616 989 SMART pum_5 732 767 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 696 731 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 804 840 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 768 803 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 841 876 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 660 695 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 877 912 IPR001313 GO:0003723
Amo04g0616 989 SMART pum_5 919 954 IPR001313 GO:0003723
Amo04g0616 989 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 45 982 - -
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 696 731 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 701 729 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 846 878 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 778 802 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 881 915 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 808 843 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 925 956 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 736 769 IPR001313 GO:0003723
Amo04g0616 989 Pfam Pumilio-family RNA binding repeat 664 698 IPR001313 GO:0003723
Amo04g0616 989 CDD Pumilio 655 976 IPR033712 GO:0003723
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 913 954 IPR001313 GO:0003723
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 768 803 IPR001313 GO:0003723
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 804 840 IPR001313 GO:0003723
Amo04g0616 989 MobiDBLite consensus disorder prediction 269 288 - -
Amo04g0616 989 ProSiteProfiles Pumilio RNA-binding repeat profile. 732 767 IPR001313 GO:0003723
Amo04g0616 989 SUPERFAMILY ARM repeat 645 977 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0616 Amo-Chr4 17386646 17395197 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0616 K17943 - gmx:100780168 1543.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1739 14 35590764 35599089 Amo04g0616 04 17386646 17395197 hybridization