Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0579 ATGGAGGGTACCCTCTTCCCCAATAGGCCAGTGTTACCAGCGCCACCAAACAAACCCACAAGGCCTTTGAAATCGAAGCCAACAACACTTCTTCCACCTCTTAACCCTCCTCCGCCGCCACCATCTCCGCCACCATCATTTCAATTGGATTCTCTTCTCCATCACTTGCAGAATCTCACTGCTGTCACTCCAACTCAGAACGACATGACCCATTTCCCTTCTTTACAGGTACTCCTTGATTCCTCTGAGAGAAAGCAACCCAATTCAGGTTCTGACCCCAGGATTGGTCAAGACCATATCTTTGATGCAAAGTTTGAATTTTTATCTGAAAAGGGTAAGTTGATGCTCAATTCGATTGTTGGGTCACCTTTGCGTCGCTTGAATGATTTTTTTGATTCTGCGAAATTTGAGTTGCTTGAAGTTGATTTGACAAGCCTGTTGAGGGCTTTGGACCTTTCTGGGAATTGGGAAAGGGCCATTTTGTTGTTTCAGTGGTTATTGTTGAATTTTGGGGATGAGAGTTTGAGGGTGGATAACCAGCTTATTGAAATTACGGCTAAGATATTAGGGAGAGAATCGCAGCATTCGATTGCATCCAAACTGTTTGATTTAATTCCTGTTGAAGAATACTCTCTTGATATCAAGGCTTACACCACTATTCTTCATGCATATGCTCGCACTGGAAAGTATAAGCGAGCTATTTATATCTTTGAGAAGATGAAGGAGAGTGGTCTTGATCCTAGTTTGGTCACTTACAATGTTATGCTTGATGTTTATGGCAAGATGGGTCGTTCCTGGAGTAAAATCTTGGGCCTATTGGATGAGATGAGAGACAAAGGGCTCGAGTTCGATGAGTTTACGTGCAGCACTGTGATCTCTGCTTGTGGGAGAGAGGGCATGCTAGAGGAAGCAAGGAAATTTTTCGCTGAAATAAAATCCAATGGCTATAAACCGGGAACTGTTACTTATAATTCGCTGCTGCAGGTGTTTGGAAAGGCTGGAGTTTATGCAGAGGCGTTGAGCATCTTAAAGGAAATGGAGGATAACAATTGCCCACCTGATGCTGTCACTTACAATGAGCTTGTGGCAGCATATGTAAGAGCTGGGTTTCTTGATGAAGGTGCCGGTGTCATAGATACAATGACCAGTGGAGGAGTAATGCCAAATGCTGTTACTTACACAACCATTATAAATGCATATGGTAAGGCAGGGAATGAAGACAAGGCGTTAAAGTTGTTCGCCCAAATGAAGGAGTCGGGTTGTGTCCCTAATGTGTGCACATACAATGCGGTTCTTGCAATGCTAGGAAAAAAGATGAGATCAAAAGACATGATTAAGGTTTTCTGTGACATGAAGTTGAACAGATGTGCTCCTAATCGTGCTACGTGGAACACCATGCTTGCTGTGTGTGGTGATAAGGGTAAGCACAATTATGTCAACCAGGTTCTAAGAGAAATGAAGAACTGCGGATTTGAGCCTGATAAAGACACATTCAATACGTTAATTAGTGCATATGGTAGGTGTGGATCCGAAGTTGATGCTGCAAAAATGTATGGGGAAATGATTAAAGCTGGCTTTACTCCATGCGTAACAACTTATAATTCTCTTCTAAATGCTCTTGCAAGGCGAGGTGATTGGAAAGCAGCTGAATCTGTCATTCAGGACATGGCGAAGAAGGGCTTTAAGCCTAATGAAACCTCATACTCGCTTTTGCTTCATTGTTATTCCAAGAATGGGAACATCAAGGGCATAGAGAAAGTGGAGAAAGAAATCTACAATGGCCAGGTATTTCCCAGTTGGATGCTTTCAAGAACACTTGTCATAGCATATTCCAAGTGCAGGCACCTTAAGGGAATGGAAAGGACGTTTCAGCAACTGCAAAAGAATGGATACAAGCCTGATTTGGTCATAGTTAATGCCATGCTCTCTATGTTTGTTCGAAACAAGTTGTACGATAAGGCGCATGAAATGGTGCATTTTGTTCATGAAATCGGACTGCAGCCGAATCTTGTTACCTATAATAGCTTGATGGACTTGCACGCTCGAGAGGGCGAGTGTTGGAAAGCCGAAGAATTGCTCAAAGGAATCCAAAGCTCGGGTCATAAGCCGGATGTTGTGTCTTATAACACTGTCATTAAGGGGTTTTGCAAGCAAGGGCTCATGCAGGAGGCTATTAGAGTCCATTCGGAGATGACCGCTAACGGAATTCGACCGTGCATCTTCACATACAACACATTTTTGGCAGGCTATTCAGGGCAGGGGTTGTTCAAGGAAGCAGAAGAGGTGATTATGTATATGATTGAACACAATTGCAGGCCAAATGAGATGAGTTACAAGATTGTTGTTGATGCTTATTGTAAAGCAAAGAAATATAAAGAAGCAGTGATCTTTGTGTCAGAGATTAAGCAGTTTGATGACTCTTTTGATGACCAATCTGTGAAAAGGCTATCTTCTTACATTTGGGAGATTTCAGGGTCTTGA 2481 0.4272 MEGTLFPNRPVLPAPPNKPTRPLKSKPTTLLPPLNPPPPPPSPPPSFQLDSLLHHLQNLTAVTPTQNDMTHFPSLQVLLDSSERKQPNSGSDPRIGQDHIFDAKFEFLSEKGKLMLNSIVGSPLRRLNDFFDSAKFELLEVDLTSLLRALDLSGNWERAILLFQWLLLNFGDESLRVDNQLIEITAKILGRESQHSIASKLFDLIPVEEYSLDIKAYTTILHAYARTGKYKRAIYIFEKMKESGLDPSLVTYNVMLDVYGKMGRSWSKILGLLDEMRDKGLEFDEFTCSTVISACGREGMLEEARKFFAEIKSNGYKPGTVTYNSLLQVFGKAGVYAEALSILKEMEDNNCPPDAVTYNELVAAYVRAGFLDEGAGVIDTMTSGGVMPNAVTYTTIINAYGKAGNEDKALKLFAQMKESGCVPNVCTYNAVLAMLGKKMRSKDMIKVFCDMKLNRCAPNRATWNTMLAVCGDKGKHNYVNQVLREMKNCGFEPDKDTFNTLISAYGRCGSEVDAAKMYGEMIKAGFTPCVTTYNSLLNALARRGDWKAAESVIQDMAKKGFKPNETSYSLLLHCYSKNGNIKGIEKVEKEIYNGQVFPSWMLSRTLVIAYSKCRHLKGMERTFQQLQKNGYKPDLVIVNAMLSMFVRNKLYDKAHEMVHFVHEIGLQPNLVTYNSLMDLHAREGECWKAEELLKGIQSSGHKPDVVSYNTVIKGFCKQGLMQEAIRVHSEMTANGIRPCIFTYNTFLAGYSGQGLFKEAEEVIMYMIEHNCRPNEMSYKIVVDAYCKAKKYKEAVIFVSEIKQFDDSFDDQSVKRLSSYIWEISGS* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0579 826 PANTHER OS03G0856100 PROTEIN 1 822 - -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 389 423 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 739 773 IPR002885 -
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 594 659 IPR011990 GO:0005515
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 660 732 IPR011990 GO:0005515
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 733 807 IPR011990 GO:0005515
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 312 384 IPR011990 GO:0005515
Amo04g0579 826 MobiDBLite consensus disorder prediction 1 48 - -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 704 738 IPR002885 -
Amo04g0579 826 SUPERFAMILY HCP-like 215 418 - -
Amo04g0579 826 Pfam Pentatricopeptide repeat domain 623 679 IPR002885 -
Amo04g0579 826 Pfam Pentatricopeptide repeat domain 212 262 IPR002885 -
Amo04g0579 826 Pfam Pentatricopeptide repeat domain 377 437 IPR002885 -
Amo04g0579 826 MobiDBLite consensus disorder prediction 29 47 - -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
Amo04g0579 826 PANTHER - 1 822 - -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 669 703 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 459 493 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 283 IPR002885 -
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 139 311 IPR011990 GO:0005515
Amo04g0579 826 Pfam PPR repeat 700 732 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 391 425 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 356 390 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 532 565 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 671 705 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 741 775 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 426 459 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 321 355 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 462 494 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 216 248 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 497 528 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 286 319 IPR002885 -
Amo04g0579 826 TIGRFAM PPR: pentatricopeptide repeat domain 706 738 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 354 388 IPR002885 -
Amo04g0579 826 Pfam PPR repeat family 528 576 IPR002885 -
Amo04g0579 826 Pfam PPR repeat family 318 365 IPR002885 -
Amo04g0579 826 Pfam PPR repeat family 458 505 IPR002885 -
Amo04g0579 826 Pfam PPR repeat family 738 787 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 529 563 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 634 668 IPR002885 -
Amo04g0579 826 Pfam PPR repeat 286 315 IPR002885 -
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 385 473 IPR011990 GO:0005515
Amo04g0579 826 Gene3D Tetratricopeptide repeat domain 474 593 IPR011990 GO:0005515
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 319 353 IPR002885 -
Amo04g0579 826 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 424 458 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0579 Amo-Chr4 15259506 15262299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0579 616 805 Glycosyltransferase AT1G05670 25.000 2.05e-15 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0579 K17710 - gmx:100803889 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1713 14 33688901 33691638 Amo04g0579 04 15259506 15262299 hybridization