Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0469 ATGCATCCACAACTAGTGAGTGACTATGATCACAAGTCTCCAAGCAACGAGGCCGTACCGTCAAAAGCATGTCGAATTTGCGGCGATGAGATCGGACAGAAGGAAGACGGAGAGGTGTTCAGGGCATGCCAAGTTTGTGCATTCCCTGTATGCCAGCCCTGCTATGAATATGAGAGGAGTGAAGGGAACCAGTGCTGCCCTCAATGCAACACTCGCTATAAGCGCCAAAAAGGTTGTCCTAGAGTTATTGGAGATGAGGAGGAGAATTTTGATGCAGAGGATTTTGATGATGAGTTTCAGATTAAGAACCATTCTGATGATGCTGATGCAAAACTTGCTTCTAATCATGGAGAAAATGGAGACTGCAATCAACAGAAATTGAATCCAAATGGCCAAGCTTTCTCTTCAGCAGGAAGCGTTGCTGGCAAGGATTTTGAAGGAGACAAAGAATTTTATAGCAATGAAGAATGGCAAGAAAGAGTAGAGAAATGGAAAGTAAGGCAAGAGAAGAAAGGTTTGCTAAACAAAGAGGAAGAAAAAGAACAAGTTGAAGATGATGATTACCTTTTGGCGGAAGCGAGGCAACCACTATGGCGCAAGGTTCCAATAGCTTCAAGCCTAATCAACCCATATCGCATAGTGATTGTGATGAGGCTGGTGATCCTAGCATTCTTTTTCAGATTTCGGATCTTAACTCCGGCCTATGATGCATATCCCTTGTGGCTTATCTCTGTGATATGTGAGATATGGTTTGCAATGTCATGGATCCTTGATCAGTTCCCAAAGTGGTTCCCCATCACACGCGAGACTTACTTGGACCGGTTGTCCATAAGGTTCGAGCGTGAAGGGGAGCCAAACCAACTGTGCCCTGTTGATGTGTTTGTGAGTACTGTGGATCCTCTGAAGGAGCCACCAATCATAACAGCAAACACTGTTCTTTCAATCCTCTCTGTTGACTATCCTGTTGAGAAGGTCTGCTGCTATGTCTCGGACGATGGTGCTTCCATGCTCCTCTTTGATTCGTTGGCCGAAACTGCCGAGTTTGCAAGAAGATGGGTTCCATTCTGCAAAAAGTATAAGATCGAGCCAAGGGCTCCTGAGTTCTATTTCTCTGAGAAGATTGATTACTTGAAGGACAAGGTTCAGCCTACATTCGTTAAGGAGCGAAGAGCCATGAAGAGAGAATATGAAGAATTCAAAGTGAAAATCAATGCCTTGGTGGCAAAGGCTCAGAAGAAACCAGAAGATGGATGGGTGATGCAAGATGGAACTCCATGGCCGGGAAACAACACTCGCGATCATCCGGGAATGATTCAGGTATATTTGGGTAGTGCTGGTGCACTAGACGTGGAAGGCAAGGAACTGCCGCGACTCGTGTATATTTCGCGTGAGAAACGGCCTGGCTATCCACACCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGAGTTTCTGCTGTTCTTACAAATGCACCTTTCATGCTGAATCTGGATTGTGATCACTACATCAATAATAGCAAGGCTTTAAGAGAGGCTATGTGCTTCTTGATGGACCCCCAGCTTGGGAAGAAGCTCTGTTATGTCCAATTTCCACAAAGATTCGACGGTATTGATCGCCATGATAGATATGCAAATCGAAACACTGTGTTCTTTGATATCAATATGAAAGGACTAGATGGGATTCAAGGTCCGGTTTATGTTGGTACTGGAACTGTGTTCAACAGGCAAGCATTGTACGGCTATGATCCACCGGTATCCGAGAAGAGGCCCAAGATGACTTGTGACTGTTGGCCATCATGGTGTTGCTTTTGTTGCGGCGGTTCCAGGAAATCCAAGTCAAAAAAGAAATCAGGAGCAGGAAGTGGTCTCTTAGGTGCATTATACACCAAGAAGAAGAAGAAAATGATGGGAAAAAATTATGTTAGAAAGGGTTCTGGCTCCGTGTTTGATCTTGAAGAGATTGAAGAAGGTCTTGAAGGCTATGAGGAGCTAGAGAAGTCATCTCTCATGTCACAGAAAAACTTTGAGAAGCGATTCGGGCAATCGCCGGTTTTCATTGCTTCCACTTTGATGGAGAATGGAGGACTACCTGAAGGCACCAATTCTCAAGCATTGGTTAAGGAGGCCATTCATGTTATAAGCTGTGGCTATGAAGAGAAGACTGATTGGGGCAAAGAGATTGGATGGATTTATGGGTCAGTGACAGAAGATATTTTGACTGGATTCAAGATGCACTGTAGAGGATGGAAATCAGTGTATTGCATGCCAAAGAGGGCAGCTTTCAAGGGATCTGCACCAATAAATCTATCAGATAGGTTGCACCAAGTTCTGAGGTGGGCTCTTGGTTCGGTTGAGATTTGCCTAAGTCGCCATTGTCCATTATGGTATGGCTATGGAGGAAAGTTGAAGTACCTAGAGAGGTTGGCTTACACTAACACCATTGTTTATCCATTCACTTCCATTCCTTTGCTTGCATATTGCACAATACCAGCTGTTTGTCTCTTGACCGGGAAATTCATCATCCCCACTCTGACCAACCTTGCTAGTGTATGGTTCATGGCCCTATTTATCTCCATCATCTTAACCGGTGTCCTCGAGCTCCGGTGGAGTGGCGTTACCATAGAAGACTGGTGGCGAAACGAGCAATTCTGGGTGATCGGAGGCGTATCGGCCCACCTTTTCGCCGTATTCCAAGGACTTCTGAAAGTCCTTGCCGGAGTAGACACCAACTTCACTGTCACAGCAAAAGCAGCAGACGATACAGAATTCGGAGAGCTGTATATGTTCAAATGGACAACACTTCTCATCCCACCAACCACTCTCATAATCTTGAACATTGTTGGAGTTGTAGCTGGTGTGTCTGATGCAATCAACAATGGATATGGATCATGGGGTCCCTTGTTTGGGAAGCTATTCTTTGCATTTTGGGTCATTGTTCACTTATATCCTTTCCTTAAAGGTCTCATGGGGAAACAAAACAGAACTCCTACTATTGTGGTTCTTTGGTCAATTCTTTTGGCTTCTATTTTCTCATTGATTTGGGTTAGGATTGATCCTTTCTTGCCAAAGCAAACAGGTCCAATACTCAAACAATGTGGTGTAGAATGCTAA 3111 0.4462 MHPQLVSDYDHKSPSNEAVPSKACRICGDEIGQKEDGEVFRACQVCAFPVCQPCYEYERSEGNQCCPQCNTRYKRQKGCPRVIGDEEENFDAEDFDDEFQIKNHSDDADAKLASNHGENGDCNQQKLNPNGQAFSSAGSVAGKDFEGDKEFYSNEEWQERVEKWKVRQEKKGLLNKEEEKEQVEDDDYLLAEARQPLWRKVPIASSLINPYRIVIVMRLVILAFFFRFRILTPAYDAYPLWLISVICEIWFAMSWILDQFPKWFPITRETYLDRLSIRFEREGEPNQLCPVDVFVSTVDPLKEPPIITANTVLSILSVDYPVEKVCCYVSDDGASMLLFDSLAETAEFARRWVPFCKKYKIEPRAPEFYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVKINALVAKAQKKPEDGWVMQDGTPWPGNNTRDHPGMIQVYLGSAGALDVEGKELPRLVYISREKRPGYPHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKALREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNTVFFDINMKGLDGIQGPVYVGTGTVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCFCCGGSRKSKSKKKSGAGSGLLGALYTKKKKKMMGKNYVRKGSGSVFDLEEIEEGLEGYEELEKSSLMSQKNFEKRFGQSPVFIASTLMENGGLPEGTNSQALVKEAIHVISCGYEEKTDWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRAAFKGSAPINLSDRLHQVLRWALGSVEICLSRHCPLWYGYGGKLKYLERLAYTNTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFISIILTGVLELRWSGVTIEDWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGVDTNFTVTAKAADDTEFGELYMFKWTTLLIPPTTLIILNIVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGKQNRTPTIVVLWSILLASIFSLIWVRIDPFLPKQTGPILKQCGVEC* 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0469 1036 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 403 582 IPR029044 -
Amo04g0469 1036 Pfam Zinc-binding RING-finger 19 89 IPR027934 -
Amo04g0469 1036 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 14 109 - -
Amo04g0469 1036 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 840 IPR029044 -
Amo04g0469 1036 Coils Coil 389 409 - -
Amo04g0469 1036 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 152 1036 - -
Amo04g0469 1036 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 14 109 - -
Amo04g0469 1036 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 152 1036 - -
Amo04g0469 1036 Coils Coil 166 186 - -
Amo04g0469 1036 SUPERFAMILY RING/U-box 9 90 - -
Amo04g0469 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 98 IPR013083 -
Amo04g0469 1036 CDD mRING-HC-C4C4_CesA_plant 22 72 - -
Amo04g0469 1036 Pfam Cellulose synthase 291 1029 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0469 Amo-Chr4 9551152 9557117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0469 14 1036 Glycosyltransferase AT5G05170 64.870 0.0 1428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0469 K10999 - gmx:100781996 1847.79