Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0424 ATGCCTCCTTCTTCTTCTTCTTTTTATTCTGTTTCTGATTTGGCTATTCCCCATTTTACCCTTAAGACAACCTTCATTATCTCCTACCTGGCGGTGGCGCTAGTGGCGGTGGCGCCCCTCCCCTCACGCTCCATCAACATTACCGCCGTCCTCTCCCCTTTCCCAGACTTCTCCCAATTCACCTCCCTCCTCGCCCCAATTTCGTCCGACCTCGCCGGCCGCACCTCTCTCTCCCTCCTCGCCGTCCCAAACTCCCGCCTCTCCTCTGCTCCACACCTCTCTCCCTCCGCCCTCCCGGATGTCCTCCGCTACCACGTCCTCCTCCAATTCCTCTCCCTCTCCGACCTCCACTCCCTCCCTCCCTCCGGCAAGCTCTTCACCACTCTCTTCCAGACCACTGGCCGCGCCCCCTCCAACTCCGGCTCCCTTAACCTCACCCGCGACCCTCGAAACGGCATCGTTACGATCACTTCCCCTTACTCCCCTTCCTCAAACGCCACCGTTTTGTCCTTAGTCAAAACCTTACCTTATAACGTCACCGTTTTCTCCGTTGATAACCTCATCCTCCCTTTCGGCCTCGATCTCATGGCCTCGGAGACTCACCCCAATCTAGGGCTCAACATCACCAAGGCCTTAATCGACGGCAAGAACTTCAACGTCGCCGCCTCCATGCTCGCAGCCTCGGGCGTCGTCGAAGAATTCGAGGCCGACGAGGGCGGCGCTGGAATTACTATGTTCGTCCCCGTCGACGATGCATACGCCGATCTGCCTCCAGCCGTTAGCTTGCAATCCCTTCCGGCGGATAAGAAAGCCGTCGTGCTCAAATTTCATGTGCTGCATTCGTATTACCCCTTGGGATCGTTGGAATCGGTGGTGAACCCTCTTCAGCCGACGCTCGCGACGGAGGCCATGGGTGCTGGGAGCTTCACGCTCAACATTTCCCGCGTGAACGGCTCCGTTGCGATCAACACTGGGATCGTGCAAGCTTCCGTGACGCAGACGGTGTTTGATCAGAACCCCGTGGCAATCTTCGGCGTCTCGAAGGTTCTGCTGCCGAGGGAGATCTTCGGGAAGAATCCGATCACGACGCCGAAGCTTGGATCGACTGCACCGCCTCCGGAAGACGATGCGCTGTCACCAGAGGGGTCGCCGGGGGCAATGGATGGCCAGCCTTCGCACCTCTCATCGCCGCCCGGGTTCCGCGAGGACATGCAGTCCAACGCTGCTGCCTCCGGTGTTCGTGGTTCCAAATTCAAGTCTTCCATTGTTGTTGCTGTATTTGTTTGCTGTATAGGGTTTTGTATTTAG 1308 0.578 MPPSSSSFYSVSDLAIPHFTLKTTFIISYLAVALVAVAPLPSRSINITAVLSPFPDFSQFTSLLAPISSDLAGRTSLSLLAVPNSRLSSAPHLSPSALPDVLRYHVLLQFLSLSDLHSLPPSGKLFTTLFQTTGRAPSNSGSLNLTRDPRNGIVTITSPYSPSSNATVLSLVKTLPYNVTVFSVDNLILPFGLDLMASETHPNLGLNITKALIDGKNFNVAASMLAASGVVEEFEADEGGAGITMFVPVDDAYADLPPAVSLQSLPADKKAVVLKFHVLHSYYPLGSLESVVNPLQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGKNPITTPKLGSTAPPPEDDALSPEGSPGAMDGQPSHLSSPPGFREDMQSNAAASGVRGSKFKSSIVVAVFVCCIGFCI* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0424 435 Pfam Fasciclin domain 217 352 IPR000782 -
Amo04g0424 435 SUPERFAMILY FAS1 domain 212 352 IPR036378 -
Amo04g0424 435 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 29 433 IPR033254 -
Amo04g0424 435 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 4 29 433 - -
Amo04g0424 435 Gene3D FAS1 domain 38 190 IPR036378 -
Amo04g0424 435 ProSiteProfiles FAS1/BIgH3 domain profile. 44 188 IPR000782 -
Amo04g0424 435 MobiDBLite consensus disorder prediction 361 407 - -
Amo04g0424 435 Gene3D FAS1 domain 206 353 IPR036378 -
Amo04g0424 435 ProSiteProfiles FAS1/BIgH3 domain profile. 205 350 IPR000782 -
Amo04g0424 435 SUPERFAMILY FAS1 domain 43 190 IPR036378 -
Amo04g0424 435 SMART fasc_3 244 353 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0424 Amo-Chr4 8305919 8307552 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0424 - - aip:107639086 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1558 14 28047964 28049779 Amo04g0424 04 8305919 8307552 hybridization