Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo04g0401 | ATGGATTTCAGCACAATAAAAAGAAAAATGGAAGCTAAGGATGGCTCTGGTTATAAGAATGTCAGGGAGATATATTCTGATGTAAGGTTGATTTTTAAGAATGCAATGAAATACAATGATAAAAAGAATGAAGTCCATGTTATGGCGAGAACCTTGCTGAACAAGTTCGAAGAGAAATGGCTGCTCCTGTTGCCTAAAGTTGACCAAGAGGAGAGGAGACATTTAAAGGAAGAAGCGGATGCACAGTTGGAAACACAGCTCGCACAAGAAGCAACTTATGCCAATATGACTAGGGATTTATCTGTTGAGCTGGACAAGGTTGATGTGCATTTGAAGAGTCTTAAAGCATTGGTTATTCAAAACTGCAGGAAACTCTCATCTCAGGAGAAAGTTCTACTTGGGACAGCTCTCCCAAGGTTGTCTCCTGAATACCTCATCAGAGCATTGCAAATAGTTCATGAAAACAATCCAAACTTCCAACCTAATGCTGAAGTTGTGGAACTTGACATTAATTCTCAGAACGACTACACACTGTGGAGGTTAAACGTTTTTGTCAAGCATGCATTGAAAGTTCAGGGAAGAACTGCTGAGGGCACAGGTGTTGACCATAGTAATAAAACCGAGAACAAGAACTACTCCAAAAGGAGGAGAATTTTGTGA | 660 | 0.4 | MDFSTIKRKMEAKDGSGYKNVREIYSDVRLIFKNAMKYNDKKNEVHVMARTLLNKFEEKWLLLLPKVDQEERRHLKEEADAQLETQLAQEATYANMTRDLSVELDKVDVHLKSLKALVIQNCRKLSSQEKVLLGTALPRLSPEYLIRALQIVHENNPNFQPNAEVVELDINSQNDYTLWRLNVFVKHALKVQGRTAEGTGVDHSNKTENKNYSKRRRIL* | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo04g0401 | 219 | Pfam | Bromodomain | 1 | 50 | IPR001487 | GO:0005515 | |
| Amo04g0401 | 219 | Pfam | Bromodomain extra-terminal - transcription regulation | 125 | 186 | IPR027353 | - | |
| Amo04g0401 | 219 | PANTHER | TRANSCRIPTION FACTOR GTE1-LIKE ISOFORM X1 | 1 | 216 | IPR017413 | GO:0005634|GO:0006355 | |
| Amo04g0401 | 219 | PANTHER | OSJNBA0053K19.4 PROTEIN | 1 | 216 | - | - | |
| Amo04g0401 | 219 | SUPERFAMILY | Bromodomain | 1 | 68 | IPR036427 | GO:0005515 | |
| Amo04g0401 | 219 | Gene3D | - | 119 | 195 | IPR038336 | - | |
| Amo04g0401 | 219 | MobiDBLite | consensus disorder prediction | 201 | 219 | - | - | |
| Amo04g0401 | 219 | ProSiteProfiles | Bromodomain profile. | 1 | 46 | IPR001487 | GO:0005515 | |
| Amo04g0401 | 219 | MobiDBLite | consensus disorder prediction | 195 | 219 | - | - | |
| Amo04g0401 | 219 | ProSiteProfiles | NET domain profile. | 115 | 196 | IPR027353 | - | |
| Amo04g0401 | 219 | Gene3D | - | 1 | 89 | IPR036427 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo04g0401 | Amo-Chr4 | 7849464 | 7851338 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo04g0401 | - | - | lja:Lj0g3v0059669.1 | 282.722 |