Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0116 ATGGATATTAGAGGGGAAGGGATTTTCCCTGATGAGGTGGTTATTCAGATTCTTGCTAGGTTACCTGTGAAGCCGCTTCTTAGGTGCAAAACAGTGTGTAAGCTTTGGTATAAGTTGTTATTTGATAAGTATTTCATTCAAGTTTACAATGAGGTGTCAAGGAAGAACCCTATGATCCTTGTTGAGATTTCAGACTCATCATTAGTCTCCAAATCTAGTTTGATCTGTGTTGATAATTTGAGGGGTGTATCTGAATTCTCACTAGACTTCTTGAATGATAGAGTTAAGGTTAGAGCATCTTGCAATGGCTTGTTGTGTTGCTCTAGTATCCCTGATAAGGGTGTGTTCTATGTCTGCAATCCTGTCACTAGGGAATTTAGGTTGCTTCCCAAGAGTAGGGAACGGCCCGTGACGAGGTTTTATCCGGATGGAGAAGCGACTTTGGTTGGCTTGGCTTGTGATTCTATGTATCAGAAGTTTAATGTTGTCTTGGCCGGTTGCCATCGCACTTTTGGCCATAGGCCTGATGGGAGTTTCATATGTTTGGTGTTCGATTCGGAGATGAACAAGTGGAGGAAGTTCATTTCGTTTCAAGATGACCATTTTACTCACATGAATAAGAACCAAGTTGTTTATGTCAATAATGCGCTTCATTGGTTGACGGCTAGCGCGACTTACATACTTGTGCTTGATTTGAGTTGTGATGTTTGGAGGAAGATGCCGTTGCCATATGAATTGAGTTATAGGGTGGGGAATAGGATTTATCTCTTGGACTTCGATGGCAGCTTGTCAGTTATTCAAATTTCGGAAGCATGGATGAACATATGGGTGCTAAAAGATTACTGGAAGGATGAATGGTGTTTGGTGGATAAGGTAAGTCTGAGGTGTATCAGAGGAATGGTGCCGGGCATTTTCCCTATAAGCCAGACGGGCGAATACGTCTTTCTTGCGACTCATAAGCAGGTTTTGGTTTATCATCGCAGGACTCAGGTTTGGAAAGAAATGTACTCTGTGAAGTATAGCTCAACACTGCCATTGTGGTTTTCGGCACATGCTTATCGCAGCACGATGTTCTCATGTAACTGA 1086 0.4236 MDIRGEGIFPDEVVIQILARLPVKPLLRCKTVCKLWYKLLFDKYFIQVYNEVSRKNPMILVEISDSSLVSKSSLICVDNLRGVSEFSLDFLNDRVKVRASCNGLLCCSSIPDKGVFYVCNPVTREFRLLPKSRERPVTRFYPDGEATLVGLACDSMYQKFNVVLAGCHRTFGHRPDGSFICLVFDSEMNKWRKFISFQDDHFTHMNKNQVVYVNNALHWLTASATYILVLDLSCDVWRKMPLPYELSYRVGNRIYLLDFDGSLSVIQISEAWMNIWVLKDYWKDEWCLVDKVSLRCIRGMVPGIFPISQTGEYVFLATHKQVLVYHRRTQVWKEMYSVKYSSTLPLWFSAHAYRSTMFSCN* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0116 361 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN 7 359 - -
Amo04g0116 361 Gene3D - 9 45 - -
Amo04g0116 361 TIGRFAM F_box_assoc_1: F-box protein interaction domain 100 326 IPR017451 -
Amo04g0116 361 ProSiteProfiles F-box domain profile. 3 52 IPR001810 GO:0005515
Amo04g0116 361 SMART fbox_2 9 49 IPR001810 GO:0005515
Amo04g0116 361 Pfam F-box-like 10 42 IPR001810 GO:0005515
Amo04g0116 361 SUPERFAMILY F-box domain 9 62 IPR036047 GO:0005515
Amo04g0116 361 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 7 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0116 Amo-Chr4 1990348 1992372 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0116 - - gmx:100811223 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1273 14 20530627 20532393 Amo04g0116 04 1990348 1992372 hybridization