Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0020 ATGAGGAATATGGCTTTGCAGAAGTATGTTCCTCCTGGTAATGCACCTTCTGTGAATTTGAAACGTTTAACTATTTCCAAGAAGGTGCCTGAAAAAGCTCAGCTTAAGATGGCAAATCAGAATCGTGACATGGATGTGGATGTTGACCTTAGAGAAGTTTATTTTCTCATGATGCACTTCCTTTCTGCTGGGCCGTGCCATAAAACTTATATGCAGTTCAGGAATGAACTTCTTGAACATCAACTCTTACCTAGAAGGTATCATGCTTGGTATTCAAGGAGTGGGGCACCTAGTGCTGATGAAGATGATGATGGTCTATCATTCTCTTTAACTTACGATAAGTTGTTGGAGAGGTATCCTCACATTGAAAAGGATCACTTAGTCAAGCTTTTGAAGCAATTGTTATTAAATACAGCCTCCCCATCTCTTCGCATGAGTAGTGGAAATGCTCCAAATGCAGCTGATGTTCCTACTCTTTTGGGGAAGGGTTCGTTTTCACTTCTGAGCTATGACAATGATAAAATAAATGAAGTCAAGCGGCCACCTCCTCACATGCGCTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAAATTGGGGGTGGTTTTCCCAGACACCATCGTGCACCATCTATACGTGCTGCTTGCTATGCAATTGCAAAGCCTTCTACCATGGTACAGAAAATGCAAAATATCAAGAGGATAAGAGGACACCGTAATGCTGTCTATTGTGCTATATTAGATCGGTCAGGGAGATATGTCATCACGGGCTCAGATGATCGACTGGTAAAAATTTGGTCAATGGAAACTGCCTATTGTTTGGCCAGTTGCCGTGGACATGAGGGTGATATCACTGACCTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCATCATCGAATGACTGTATCATTCGAGTTTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGACATACTGGAGCTGTTACTGCAATAGCATTTAGTCCAAGAACTGTGTACCATCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTACACTCAGTCAAGTCCAAGAATATATGTTCCGAGGCCTTCTGATTCTGTAATTGGGAGGAATGGTGTTTCGTCTTCTAGTACCTTGCCACATAGCCATCAGATCTTTTGCTGCGCCTTTAATGCTAATGGGACTGTCTTTGTCACTGGTAGCTCTGATAATCTTGCTAGGGTCTGGAATGCTTGTAAACCAAGTGTGGATGATACTGAACAGCCAAATCACGAGATAGATGTGTTATCTGGGCATGAAAATGATGTAAACTATGTGCAATTTAGTGGATGTGCAGTAGCATCTCGGTTTTCCACATCAGAAACTTGGAAAGAGGAAAATCTTCCCAAATTTAAGAATTCATGGTTGAATCATGACAATATTGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCCAAATCACGCAGGTCACATGGGAAAAGTGGTCGCTGGACTCGGGCATATCATCTGAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAGAGAGGTGGTCCTCGTCAGAGAACTCTACCCACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTAGATAACCGCTTTGTCCTTGCAGCTATTATGGATTGCAGAATATGTGTTTGGAATGCTTCTGATGGCAGCTTAGTACACTCGTTGACTGGACATACTGATTCTACATATGTTCTGGATGTTCACCCATTTAATCCTCGGATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTGTGGGATATATGGGAAGGCATGCCTATCCGGATATACGAGATGTCACATTTTAAGTTGGTAGATGGGAAGTTTTCTCCGGATGGGACATCCATAATACTTTCAGATGATGTTGGTCAACTATATATATTAAGTACAGGTCAAGGTGAGTCCCAGAAAGATGCAAAATATGATCAGTTCTTTCTTGGTGATTATCGTCCTCTCATTCAAGACACCCATGGTAATGTACTTGACCAGGAAACTCAGATTGTACCCTATCGACGAAATCTGCAAGATTTGCTTTGTGATTCAGCAATGATTCCTTATCCAGAACCTTATCAGAGTGAATTTCAGCAAAGACGATTAGGAGCTTTAGGCCTTGAGTGGCGGCCATCATCGCTAAGGCTTGCTGTTGGTCCTGACTTCAGTTTGGACCCAGATTATCATATGCTTCCATTGGCAGACTTGGATCTGCTTACAGAACCCCTTCCGGAGTTTATAGATGCTATGGATTGGGCTCCAGAAATTGAAGTGTTTAGTGATGATGCAGATTCAGAATATAATGTCACTGAAGATTTCTCTTCTCGAGGCGAGCAAGAATGTTCAAGCTCCAATGGCTCTGGCGATACAGGGTGCAGCACGGACAACAGTGAAGGGGAGGATGCTCATATGGACTGTATCCGTAGATCAAAAAGAAAAAGACAGAAGACTGAAATTGAGATTATGACTTCTTCTGGGAGACGTGTGAAAAGGAGGAACTTGGATGAGGTTGATGGCAATAATTTAACTGGTAGTCGAAGCAGAAAGGGAAAAAGTGGCCAAAAAGCATCAAGGAAAACTTCTAAATCCAAATCTTCCAGACCTCAAAGAGCTGCTGCACGCAATGCTCTACACTTATTTTCTAAAATTACTGGTACACCAACAGATGGAGAAGATGATAGTTTGGTTGGTGATTTTTCAGATAGTGAATCAACACTGCAAGATTCTAACATGGACAGTGATGAATCTGATAGAGCTGCACAGAATGATCAACTGAAATCTTCAAAAGGAAAAGAAGTATCAACATATGAATCGGAGGACATGAAATCTCATGGGTTAACGGAGACTGATGCAGTTGCAGGGAACAGAAGGAGATTGGTTCTCAAGTTGCCAATTCGTGATTCATCGAAACATACTCATGGATTTGACAACCAAGCTGAGTTGGTTGGGTCGTCATCAAAATCTGCACAGGAAGCTCATAATTTTAATAAGAATAGTTGTATGGATGAAGGTTATTCTGGCAGTGGAAGTTACCATACAATTGAAGGATCACATCGGTTGAATATTGAAGTAGACCGTGTAGACTTGCTGGAGAAAATTAGATGGGGAGTGGTTAGGCCTCGTTCTTCCAAACCCCTGAGAGTGGGAGAAGCTGCAGCATCAAATGCAAATCCTGACTCTCTGAAGTTTAGTAATCATCTCATTGAAACAGAAAAAGAGGAGAAGGAATTTAGTCCATTGACCCCTCCTTCAGAAACCAAAAATGATGAAAATATGGTAGACAGTCTAGCAGATATCAATGACAATGGTGATTGTACTACTCATCCTTTTAACCCTTTTGAGAATGGTGAGAATGAGGAAGAGCTCACAACTACCAGAGATCACAGGAATAAAGAGGAATCACTAGTGTCAGCCCTGATTCCTGATAATACAGGTACTGCATTTGTTAGCAATAGTGGTGCTGAGCAACTGCCTGAACCAAATAGCAGTTTCCCTTCCGTATTAACAAAGTTAAGATCAAAAAGAGGTTCAAGAGATCCTGAATGTTCATCCAAGCATGGAACAAAATCTCCAGTGCTAAAGAATAGTGCATGTAGCAATCATGCCAGCAATGAACAGTGTATGATTGTTACTGAGAATGGTGACAACAGCAAGGTAGTAATACCCAATCAGGGAGAAAATGGATCACAAGAAATAGATGCTCAAGGTACACAACATTGTACTTCAAATGGTCCACTAGAGCCACATCCCAGAAGAGATAAAATGTTCAAAGCCGTTTACAAAAGATCAAGATCAAATAGGGCATCTAATAATTCATCTAATGGTGGTGCTTTAGGAGAATCCACTTCTAATGGAAGCAATAGTAATTTCAATACATCAGTGGGTTTCAGTAATGGCACAAATAAGGATGTTCGTGACAATGGATCAATAGAGATGGAGCCAATCACATCTGACCCAAATGACAAGGGGAATCATCTCAAAGTGGAAAATGGGCATGAAGATGGTGTTGGTAGAAGTCAACATAACATGCAGACCAATGGAGTAAAGTTTACAGAAGAAGAAAGAGGTTCTAGTTCAAAATCGACCGTTGGTATAAGGTCCACCAGGAGCCGGAGATCTAGTTACAATATTCATGAAACTCATGAAACTAGTCCTGTAAATAGAAAAAAATCACTACAATCAGCTAATAAAGGATCGTGGTTGCTGTTATCAACTCAGGAAGAAGGTTGTAGATTTATTCCACAACAGGGAGATGAGGTTGTATATTTGAGGCAGGGGCACCAGGAATACATAGCTAATTATAGTCGCAAAAAGGAAGCAGGACCTTGGATGTCGATTAAGGAAAATATAAGAGCTGTAGAATATTGTATAGTTCAAAGCCTTGACTATGCTCATGATTCGGGTTCTGGTGATGGATGCTGCAAAATGATCCTTCAGTTTGTTGATCCTGATTCTAGTGTTTTCGGCAAATCTTTTAAATTGAATTTACCAGATGTGACTGGCTTCCCAGATTTTCTGGTTGAAAGAACCAGGTTTGATGCTGCTATGCAAAGAAATTGGACGCGCAGGGATAAATGCAGGGTTTGGTGGAAAGATGACAGCGAGTCCGATGGAAGTTGGTGGGAAGGTCGAATTATGTGTGAAAAAGCCAAATCTTCTGAATTTCCAGACAGTCCATGGGAGAGATATACTATTCGGTACAAGAATGATCTTACAGAAACACATTTACACAGTCCTTGGGAGCTTTTTGATGCTGATACTCAATGGGAACAGCCTCATATTGATGATGAAGTAAGAAACAAGCTGTTAACTGCACTCACCAAATTACAGGAGTCGGGAAATAAAGTTCAGGATCGTTATGGAGTTCATGAATTGCAGAAAATTTCATCCAAGTTAAAATTTTTGAACAGATTCCCTGTTCCACTGTCTCTTGATTTGATAGAGTCAAGGTTAGAGAACAATTATTACCGAAGATTGGAGGCACTGAAACATGATGTGACAATTCTGCTTTCAAATGCAGCTGCATATTTTGAAAAAGATGCGGGGATGTCAACAAAAATCAAACGCCTTTCAGAATGGTTCACGAAAACATTTTTATCTTTATAG 5163 0.4114 MRNMALQKYVPPGNAPSVNLKRLTISKKVPEKAQLKMANQNRDMDVDVDLREVYFLMMHFLSAGPCHKTYMQFRNELLEHQLLPRRYHAWYSRSGAPSADEDDDGLSFSLTYDKLLERYPHIEKDHLVKLLKQLLLNTASPSLRMSSGNAPNAADVPTLLGKGSFSLLSYDNDKINEVKRPPPHMRWPHMKANQVHGLNLREIGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRIRGHRNAVYCAILDRSGRYVITGSDDRLVKIWSMETAYCLASCRGHEGDITDLAVSSNNALVASSSNDCIIRVWRLPDGLPISVLRGHTGAVTAIAFSPRTVYHLLSSSDDGTCRIWDARYTQSSPRIYVPRPSDSVIGRNGVSSSSTLPHSHQIFCCAFNANGTVFVTGSSDNLARVWNACKPSVDDTEQPNHEIDVLSGHENDVNYVQFSGCAVASRFSTSETWKEENLPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRTLPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTDSTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIRIYEMSHFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMDWAPEIEVFSDDADSEYNVTEDFSSRGEQECSSSNGSGDTGCSTDNSEGEDAHMDCIRRSKRKRQKTEIEIMTSSGRRVKRRNLDEVDGNNLTGSRSRKGKSGQKASRKTSKSKSSRPQRAAARNALHLFSKITGTPTDGEDDSLVGDFSDSESTLQDSNMDSDESDRAAQNDQLKSSKGKEVSTYESEDMKSHGLTETDAVAGNRRRLVLKLPIRDSSKHTHGFDNQAELVGSSSKSAQEAHNFNKNSCMDEGYSGSGSYHTIEGSHRLNIEVDRVDLLEKIRWGVVRPRSSKPLRVGEAAASNANPDSLKFSNHLIETEKEEKEFSPLTPPSETKNDENMVDSLADINDNGDCTTHPFNPFENGENEEELTTTRDHRNKEESLVSALIPDNTGTAFVSNSGAEQLPEPNSSFPSVLTKLRSKRGSRDPECSSKHGTKSPVLKNSACSNHASNEQCMIVTENGDNSKVVIPNQGENGSQEIDAQGTQHCTSNGPLEPHPRRDKMFKAVYKRSRSNRASNNSSNGGALGESTSNGSNSNFNTSVGFSNGTNKDVRDNGSIEMEPITSDPNDKGNHLKVENGHEDGVGRSQHNMQTNGVKFTEEERGSSSKSTVGIRSTRSRRSSYNIHETHETSPVNRKKSLQSANKGSWLLLSTQEEGCRFIPQQGDEVVYLRQGHQEYIANYSRKKEAGPWMSIKENIRAVEYCIVQSLDYAHDSGSGDGCCKMILQFVDPDSSVFGKSFKLNLPDVTGFPDFLVERTRFDAAMQRNWTRRDKCRVWWKDDSESDGSWWEGRIMCEKAKSSEFPDSPWERYTIRYKNDLTETHLHSPWELFDADTQWEQPHIDDEVRNKLLTALTKLQESGNKVQDRYGVHELQKISSKLKFLNRFPVPLSLDLIESRLENNYYRRLEALKHDVTILLSNAAAYFEKDAGMSTKIKRLSEWFTKTFLSL* 1721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0020 1720 ProSiteProfiles Bromodomain profile. 1660 1703 IPR001487 GO:0005515
Amo04g0020 1720 SUPERFAMILY Bromodomain 1657 1717 IPR036427 GO:0005515
Amo04g0020 1720 Gene3D - 530 665 IPR015943 GO:0005515
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 418 IPR001680 GO:0005515
Amo04g0020 1720 Gene3D - 1620 1720 IPR036427 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1193 1216 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 322 IPR001680 GO:0005515
Amo04g0020 1720 Pfam Bromodomain 1659 1700 IPR001487 GO:0005515
Amo04g0020 1720 Gene3D - 215 385 IPR015943 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1128 1148 - -
Amo04g0020 1720 SUPERFAMILY WD40 repeat-like 230 652 IPR036322 GO:0005515
Amo04g0020 1720 SMART WD40_4 569 609 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 528 566 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 380 418 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 232 271 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 316 356 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 430 495 IPR001680 GO:0005515
Amo04g0020 1720 SMART WD40_4 274 313 IPR001680 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 789 814 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 815 856 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 280 IPR001680 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1391 1405 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1239 1410 - -
Amo04g0020 1720 CDD WD40 235 609 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 314 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 870 884 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 513 535 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 788 968 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 356 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1356 1390 - -
Amo04g0020 1720 SMART bromo_6 1621 1720 IPR001487 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 515 529 - -
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1239 1263 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 365 IPR001680 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1282 1324 - -
Amo04g0020 1720 PANTHER WD REPEAT DOMAIN 9 12 1717 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats profile. 576 610 IPR001680 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 930 965 - -
Amo04g0020 1720 Gene3D - 386 521 IPR015943 GO:0005515
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 418 - -
Amo04g0020 1720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 239 274 - -
Amo04g0020 1720 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 12 1717 - -
Amo04g0020 1720 Pfam WD domain, G-beta repeat 319 356 IPR001680 GO:0005515
Amo04g0020 1720 Pfam WD domain, G-beta repeat 570 609 IPR001680 GO:0005515
Amo04g0020 1720 Pfam WD domain, G-beta repeat 389 418 IPR001680 GO:0005515
Amo04g0020 1720 Pfam WD domain, G-beta repeat 277 312 IPR001680 GO:0005515
Amo04g0020 1720 Pfam WD domain, G-beta repeat 234 271 IPR001680 GO:0005515
Amo04g0020 1720 MobiDBLite consensus disorder prediction 1337 1355 - -
Amo04g0020 1720 CDD Bromo_WDR9_I_like 1592 1720 - -
Amo04g0020 1720 Coils Coil 1720 1720 - -
Amo04g0020 1720 ProSitePatterns Trp-Asp (WD) repeats signature. 596 610 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0020 Amo-Chr4 249422 262389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g0020 231 418 Miscellaneous Gene Families AT5G08390 22.749 1.18e-09 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0020 K11797 - gmx:100818665 2610.87