Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2193 ATGCATTATTCAAAGTGGATGTACAAAGAGGCTGTTGCACGCCTTGAGGAGTTGCAAAAGTCAATTGAGGCAAAGATGACATTACGACAAAGCAATTTGAATCCTGATAGGCCTGACTCAGGATTTTTAAGGACTCTGGATTCAAGCATTAAGCGCAATACTGCAGTCATTAAGAAACTGAAGCAGATTAATGAAGAGCAGCGTGAAACACTGATGGACGAGTTGCGCAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCTGTGACTGCTATATGTGATGCCAAGCTTAGAAGCTCAGATATACAAGCAGCAGTTCAGGTCTGCTCTTTGCTTCATCAGAGGTACAAGGACTTTGCCCCATGCCTGATTCAAGGACTTCTCAAAGTTTTCTCTCCAGGAAAGCCTGGGGATGAATCAGATGCAGACAGAAACTTGAAGGCAATGAAGAAACGCAGTACTTTGAAACTTCTATTGGAGCTTTATTTTGTTGGAGTTATTGATGATGGCAACATTTTCATGAATATCATAAAAGATCTAACTGGTATGGATCAGCTAAAAGACCGAGATGCAGCACAAACTAGTTTGACCCTTCTTTCTAGCTTTGCCCGACAAGGGAGAATCTTTCTGGGACTTCCTGTTTCTGGTCCAGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATTACGGCAGATCAAAAGAAAGTTTTCAGGAAAGCATGTTATGCATTTTATGATGCTGCAGCAGAACTACTTCAGTCTGAGCATTCTTCACTTCGACTAATGGAGCATGAAAATTCTAAGATTATTAACGCAAAAGGAGAGCTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGGAAATCTTATGACCATTTGTATCGTAACATCTCATCATTGGCAGAGGCACTTGATATGCAACCTCCAGTAATGCCAGAAGATGGTCACACAACAAGAGTTACTACTGGTGAGGAAGCTACTTCTGCGGGTGGGAAAGATTCTTCTATAGCTGAACCTGTATGGGATGATGAAGATACAAGGGCTTTCTATGAATGTTTACCCGATCTAAGAGCTTTTGTTCCTGCTGTGCTTTTGGGCGAAGCAGAGCCAAAAACAAGTGAGCAATCAGTGAAGAGTCAAGACCAACCAACTGAAATAGTACCTGAATCTGACAAAGGTCAACTGGGCAACCATGACAGTGGAGATGCATCGGCAGAATCTAGTGCTGTGCCAGAGGGAGGAAGTGCAGAAAAAGCGAAGGATAAGGAAGAAAGAGAAAAATCAAAAGAATTGGAAAGAGAGAAGGAGAAAGAAAAAGACAATGACAAAAAGGGGGAAAATGAAAAGGACAAACTCAGAAGCCTTGAGGGGACAAATTTGGATGCTTTATTGCAAAGACTTCCTGGTTGTGTGAGCCGAGACCTTATAGATCAATTGACTGTAGAATTCTGTTATCTAAATTCAAAATCAAATCGGAAAAAACTTGTGAGGGCTTTGTTCAATGTACCAAGGACATCTCTGGAGCTGCTACCATATTACTCACGCATGGTTGCTACACTCTCAACTTGTATGAAGGATGTCTCCTCCATTCTTTTGCAGATGTTGGAGGAGGAATTCAACTTCTTAATAAATAAGAAGGACCAGATGAATATTGAGACAAAGATAAGGAACATCAGGTTCATAGGAGAACTTTGCAAGTTCAAAATTGCCCCTGCTGGCCTAGTCTTTAGTTGTTTGAAGGCCTGTTTAGATGATTTTACTCATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTATACCGGTCACCAGAAACTACTATACGTATGACTAACATGTTAGAGATACTGATGCGCTTGAAAAATGTGAAGAACTTAGATCCAAGACATAGCACTTTGGTGGAAAATGCATATTACCTTTGTAAGCCTCCAGAAAGATCTGCACGAGTGGCTAAAGTCCGTCCACCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTGGATAAGTCTACCATTGAGCATGTGTTGAGGCAACTTAGAAAATTACCATGGAGTGAATGCGAACCATATCTTTTGAAATGTTTCCTGAAGGTCTATAAAGGGAAATATGGCCAGATCCATCTGATTGCTTCTCTTGCTGCTGGTTTAAGTCGCTACCATGATGAGTTTGCAGTGGCTATAGTTGATGAGGTTTTGGAGGAGATTAGAGTTGGGCTGGAACTAAATGACTATGGGATGCAGCAAAGACGCATTGCCTACATGAGATTCTTAGGGGAGCTTTACAACTATGAGCATGTAGATTCATCTGTTATTTTTGAGACACTATACCTTATCGTCATCTATGGCCATGGGACACCAGAGCAAGATGCACTGGATCCACCTGAAGATTGTTTTCGTATAAGATTGATCATTACTCTTCTTGAAACCTGTGGACATTACTTTGATCGTGGCTCTTCAAAGAGGAAACTTGATCGATTCCTTATACACTTCCAGAGGTATATTTTAAGCAAAGGTGCACTGCCTCTCGACATTGAATTTGACTTGCAGGATCTGTTTGCGGAGTTGCGCCCCAATATGGTTAGATATACATCTGTTGATGAAGTGAATGCAGCTCTAGTAGAACTTGAAGAACATGATCGGATGGTTTCTGCTGATAAGGCCAGTAGTGAAAAACATTCTGATACTGAGAAGCCTTTGAGTAGGACTAGTTCTAACACAGTGGTAAGCAATGGACAACGCATTGATAATGGTGCAGAAGAGAATGGAGTGCAAGATGATGTTAATGACAGTGACACTGACTCAGGGAGTGGCACCATTGATGCGGAGGGACATGATGATGAAGAGTTGGATGATGAGAATCATGACGATGGATGTGAGACTGAGGATGATGATGATGATGATGATGATGGGCCTGGACCTGCTTCTGATGAGGAAGACGAAGTCCATGTGAGACAAAAGGTGACAGAGGTGGACCCTCTGGAGGAAGCCAATTTTGAACAGGAGCTGAAGGCTGTGTTACAGGAGAGTATGGAACAGCGAAGGCAGGAGCTACGAGGCCGTCCTACATTGAACATGATGATTCCAATGAATGTATTTGAGGGATCCACTAAGGATCATCATGGGAGAGGAGTTGGTGGTGAAAGTGGTGATGAGGCATTGAGTGAGGAGACCGGTGGAAACAAAGAGGTTCAAGTGAGAGTTCTTGTGAAGCGTGGGAACAAGCAGCAAACAAAACAGATGTACATCCCACGGGATTCCTCACTGGTTCTGAGTACAAAACAGAAAGAAGCAGCTGAGCTTCAAGAGAAAGAAGACATTAAGAGGCTTGTCTTGGAGTATAATGATAGAGAAGAGGAGGAGCTTAATGGACTAGGGTCCCAACCAACAAATTGGATGTTGAGTGGCGGCAACAGGACTGGTGGCCGTGGCAACACTTTGGAAGGAACCAGCAGTAGGAGTGGCGGACGGCATCGGCATCACAATTATACTGGCAGTGGCATCTACTACGGCAGGAGGAGGTAA 3543 0.4242 MHYSKWMYKEAVARLEELQKSIEAKMTLRQSNLNPDRPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRETLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQVCSLLHQRYKDFAPCLIQGLLKVFSPGKPGDESDADRNLKAMKKRSTLKLLLELYFVGVIDDGNIFMNIIKDLTGMDQLKDRDAAQTSLTLLSSFARQGRIFLGLPVSGPEIHEEFFKGLNITADQKKVFRKACYAFYDAAAELLQSEHSSLRLMEHENSKIINAKGELSDENIASYEKLRKSYDHLYRNISSLAEALDMQPPVMPEDGHTTRVTTGEEATSAGGKDSSIAEPVWDDEDTRAFYECLPDLRAFVPAVLLGEAEPKTSEQSVKSQDQPTEIVPESDKGQLGNHDSGDASAESSAVPEGGSAEKAKDKEEREKSKELEREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLPYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMTNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWSECEPYLLKCFLKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLIVIYGHGTPEQDALDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFAELRPNMVRYTSVDEVNAALVELEEHDRMVSADKASSEKHSDTEKPLSRTSSNTVVSNGQRIDNGAEENGVQDDVNDSDTDSGSGTIDAEGHDDEELDDENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEANFEQELKAVLQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVGGESGDEALSEETGGNKEVQVRVLVKRGNKQQTKQMYIPRDSSLVLSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGSQPTNWMLSGGNRTGGRGNTLEGTSSRSGGRHRHHNYTGSGIYYGRRR* 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2193 1180 MobiDBLite consensus disorder prediction 372 387 - -
Amo03g2193 1180 Coils Coil 532 552 - -
Amo03g2193 1180 Gene3D - 659 889 - -
Amo03g2193 1180 SUPERFAMILY ARM repeat 659 884 IPR016024 -
Amo03g2193 1180 Coils Coil 8 28 - -
Amo03g2193 1180 Gene3D - 4 312 - -
Amo03g2193 1180 Gene3D - 421 657 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 906 924 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 1126 1180 - -
Amo03g2193 1180 PANTHER NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 10 1179 IPR039762 GO:0000184
Amo03g2193 1180 Pfam MIF4G domain 666 860 IPR003890 GO:0003723|GO:0005515
Amo03g2193 1180 Pfam MIF4G domain 464 648 IPR003890 GO:0003723|GO:0005515
Amo03g2193 1180 MobiDBLite consensus disorder prediction 888 1002 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 305 338 - -
Amo03g2193 1180 Pfam Up-frameshift suppressor 2 983 1119 IPR007193 -
Amo03g2193 1180 PANTHER - 10 1179 - -
Amo03g2193 1180 SUPERFAMILY ARM repeat 458 652 IPR016024 -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 1042 1066 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 1130 1158 - -
Amo03g2193 1180 SUPERFAMILY ARM repeat 67 179 IPR016024 -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 415 452 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 983 1002 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 888 905 - -
Amo03g2193 1180 Gene3D - 1073 1097 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 369 452 - -
Amo03g2193 1180 SMART if4_15 461 649 IPR003890 GO:0003723|GO:0005515
Amo03g2193 1180 SMART if4_15 664 865 IPR003890 GO:0003723|GO:0005515
Amo03g2193 1180 SMART if4_15 50 272 IPR003890 GO:0003723|GO:0005515
Amo03g2193 1180 Coils Coil 419 448 - -
Amo03g2193 1180 MobiDBLite consensus disorder prediction 950 982 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2193 Amo-Chr3 86341207 86356306 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2193 K14327 - gmx:100786092 2019.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2929 13 67343840 67359705 Amo03g2193 03 86341207 86356306 hybridization