Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1600 ATGGCTGCTTCAGAGGAGAACAGTGCACTGTTCCCAATTTTCATATTGACCATAATGGCCATCCCCATTGTGCCCTATACAATTACCAAGTTATGCCGTGCTGCCACCAAAAAATCAAAGAGTATTCACTGTCATTGCTCTGAATGTTCAAAATCCGGGAAGTACCGTAAATCAATATTCAAGAGGATTTCGAGTGTCTCAACATGTAGTAACTTCACATTGTTGCTGCTTTGGGTGGTCATGATTATTCTGGTTTACTACATAAAGTCTATGAGTGGAGAGATTCAAGTTTTTGATCCATTTAGCATTCTTGGGTTAGAGCCTGGAGCACCAGAGTCTGAAATAAAGAAAAAATATAGGAGACTTTCTATTCAATACCATCCTGATAAAAATCCAGATCCAGAGGCTCACAAGTATTTTGTTGAGTACATTGCCAAGGCTTATCAAGCTCTGACAGATCCTGCAGCACGTGAAAACTATGAAAAATATGGCCATCCTGATGGCAGACAGGGATTTCAAATGGGCATAGCACTCCCTCAATTCCTGCTAAATATTGATGGAGCATCTGGTGGCATACTTCTGCTTTGGATTGTTGGCGTGTGTATTCTCTTGCCATTGGTTATTGCTGTAATTTATCTCTCCAGATCATCGAAGTATACTGGCAACTATGTGATGCATCAAACACTGTCCACTTACTATTACCTTATGAAGCCTTCTTTGGCTCCCAGCAAAGTCATGGATGTCTTCATAAAGGCTGCTGAATATATGGAAATTCCAGTTCGTAGGACCGATGACGAACCTCTTCAAAAGCTCTTTATGTTAGTGAGGAGTGAGCTGAACCTTGACCTCAAGAACATTAAGCAGGAGCAAGCTAAGTTTTGGAAGCAGCATCCTCCACTGGTTAAGACTGAGTTATTAGTTCAAGCTCAGTTGACCCGAGAATTCGCAGCCTTGTCACCATCTCTACAAAGTGATTTTAAGCGAATTTTAGAAACAGCACCCCGCCTTCTTGAAGAATTAATGAAGATGGCAGTTATACCACGCAATGCTCAGGGGCATGGGTGGCTGAGGCCCGCAATTGGTGTTGTTGAGCTTTCTCAGTGTATCATCCAGGCTGTTCCACTAAGTGCTAGAAAGACTACCGGTGGATCACCAGAAGGCATTGCACCATTTCTGCAGCTGCCACATATTAATGAGACTGTTATTAAGAAGCTAAACCGCAAAAAGGTCAGAACTTTTCAGGAACTTCATGACATGGACTCACAGGAGCGAGCTGATCTGCTTACTCAAACAGCTGGGTTATCTTCATCTGATGTAAAAGACATTGAGATTGTATTGGATATGATGCCTTCCTTGACACTCGAAGTAACTTGCGAGACTGAAGGTGAAGAGGGTATCCAAGAGGGTGACATTGTTACTCTACATGCATGGGTAAATATTAAACGTGGGAATGGCCTGATTGGTGCCCTTCCGCATACACCTTACTACCCATTTCATAAGGAAGAAAATTTCTGGTTCTTGCTTGCGGATTCTGTCTCGAATAATGTGTGGTTTTCTCAGAAGGTTAGTTTCATGGATGAAGCTGCTGCTGTAACTGCTGCTTCTAAGGCAATTGAGGAATCTATGGAGGGTTCAGGAGCAACCGTGAAGGAGACCAGTAGGGCAGTTGCCGAAGCGGTTGACAAGGTTAAGGGAGGAGCTAGATTGGTTATGGGCAAGTTCCAGGCCCCATCCGAAGGGAACTACAATTTGACTTGCTATTGTTTGTGCGACTCTTGGTTGGGCTCCGACACAAGGATAAACTTAAAGCTCAAGGTCTTGAAACGGACTAGAGCCGGCACGAGGGGTGCTGTGTTGGCGGATGAAGGACCTATCATGGAGGATGGAGTTGAGGAGGACGATGATAATGAGGATGGAGAGTATGATGATGACTATGAGAGTGAGTACAGCGAAGACGAGGAAGATGATCAAAATTCAAAGAATAAGCAGCAAGCTGTCAATGGCACCACCAGTAAGCATGGCAAAGCTGCAGAACATTCTAGTTCTGATGAAGAATGA 2058 0.4373 MAASEENSALFPIFILTIMAIPIVPYTITKLCRAATKKSKSIHCHCSECSKSGKYRKSIFKRISSVSTCSNFTLLLLWVVMIILVYYIKSMSGEIQVFDPFSILGLEPGAPESEIKKKYRRLSIQYHPDKNPDPEAHKYFVEYIAKAYQALTDPAARENYEKYGHPDGRQGFQMGIALPQFLLNIDGASGGILLLWIVGVCILLPLVIAVIYLSRSSKYTGNYVMHQTLSTYYYLMKPSLAPSKVMDVFIKAAEYMEIPVRRTDDEPLQKLFMLVRSELNLDLKNIKQEQAKFWKQHPPLVKTELLVQAQLTREFAALSPSLQSDFKRILETAPRLLEELMKMAVIPRNAQGHGWLRPAIGVVELSQCIIQAVPLSARKTTGGSPEGIAPFLQLPHINETVIKKLNRKKVRTFQELHDMDSQERADLLTQTAGLSSSDVKDIEIVLDMMPSLTLEVTCETEGEEGIQEGDIVTLHAWVNIKRGNGLIGALPHTPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEAAAVTAASKAIEESMEGSGATVKETSRAVAEAVDKVKGGARLVMGKFQAPSEGNYNLTCYCLCDSWLGSDTRINLKLKVLKRTRAGTRGAVLADEGPIMEDGVEEDDDNEDGEYDDDYESEYSEDEEDDQNSKNKQQAVNGTTSKHGKAAEHSSSDEE* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1600 685 SUPERFAMILY E set domains 454 608 IPR014756 -
Amo03g1600 685 SMART Sec63_2 209 604 IPR004179 -
Amo03g1600 685 MobiDBLite consensus disorder prediction 661 675 - -
Amo03g1600 685 MobiDBLite consensus disorder prediction 625 654 - -
Amo03g1600 685 Pfam DnaJ domain 99 161 IPR001623 -
Amo03g1600 685 PANTHER SEC63 DOMAIN-CONTAINING 1 677 - -
Amo03g1600 685 Gene3D DnaJ domain 98 182 IPR036869 -
Amo03g1600 685 Gene3D C2 domain 453 613 IPR035892 -
Amo03g1600 685 Pfam Sec63 Brl domain 222 602 IPR004179 -
Amo03g1600 685 Gene3D - 225 373 - -
Amo03g1600 685 ProSiteProfiles dnaJ domain profile. 99 164 IPR001623 -
Amo03g1600 685 SMART dnaj_3 98 156 IPR001623 -
Amo03g1600 685 SUPERFAMILY Sec63 N-terminal domain-like 244 450 - -
Amo03g1600 685 SUPERFAMILY Chaperone J-domain 96 192 IPR036869 -
Amo03g1600 685 Gene3D - 389 446 - -
Amo03g1600 685 PANTHER DNAJ PROTEIN ERDJ2-LIKE 1 677 - -
Amo03g1600 685 MobiDBLite consensus disorder prediction 619 685 - -
Amo03g1600 685 PRINTS DnaJ domain signature 101 119 IPR001623 -
Amo03g1600 685 PRINTS DnaJ domain signature 119 134 IPR001623 -
Amo03g1600 685 PRINTS DnaJ domain signature 136 156 IPR001623 -
Amo03g1600 685 PRINTS DnaJ domain signature 156 175 IPR001623 -
Amo03g1600 685 CDD DnaJ 99 153 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1600 Amo-Chr3 43975050 43980311 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1600 K09540 - gmx:100809969 1218.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2869 13 62868384 62874506 Amo03g1600 03 43975050 43980311 hybridization