Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1465 ATGGTGGAAGAAAACACAACACCAACATCAACAACAAAACATGATTTTTTCGAAACCCAAGCCGTCTTGGACTTGAAGCGTTGGTTCCAAGCAATCATATCCTCACACAAGACCCTCTTTACACTCCTATGGCTGGCGGCGTTCACCTCCGCCTTCCTGTGGCAGAGGGATGCCGTTAGTGGGTTGGTGGTGATGCACGGTGGCGGTGAGTCTCTTAAGAAGAGTGAAAGTTCATTGTTGTATCCTAAGCTGAGGCCCGTGGGCTTCAGCTTAGTGGATTTCGGTGGCGTTGGCGACGGCGTTACCATGAACACTAAGGCGTTTGAGAGGGCGGTTTCAGAGATTTCTAAGTTGGGAGAGAAGGGTGGTGGGCAGCTGAATGTGCCCCCTGGTAGGTGGCTCACTGCACCTTTTAATCTCACCAGTCATATCACTCTTTTTCTTCATCAAGATGCTGTCATTCTTGGAGTTCAGGATGAAAAGTACTGGCCACTGGTGCCTGCATTGCCTTCATATGGATATGGAAGGGAGCATCCTGGCCCTCGTTACACCAGCTTGATCCATGGCCAAAATCTTACTGATGTTGTCATAACAGGGCATAATGGTACCATAAATGGACAGGGACAAACATGGTGGACAAAATATCTGCAGAAGGTTCTGAACCACACAAGGGGTCCACTGGTTCAGATCTTATGGTCTAGTGACATTCTTATAACTAACATTACTTTGCGTGACTCTCCTTTTTGGACACTTCATCCATACGATTGCAAGAATGTTACAATAAAAAACCTTACAATTTTGGCTCCTGTGTATCGATTTGTTAAGCAAGACGGGGAATTTGAAACTAGGTACGCAGATTCATGTGAAGATATGTTGATAGAGAACTGTTACATAAGCGTGGGAGATGATGCAATTGCCATAAAAAGTGGGTGGGATCAGTATGGAATTGCTTATGGAAAGCCTTCAAAGAATATAGTAATCCGAAACCTTGTTGTTCGATCTAATGTTAGTGCCGGCATCTCAATAGGCAGCGAAATGTCCGGCGGTGTATCGAACGTGACGGTGGAGAACATCCTTGTATGGAAATCCAGGCGTGCTATTCGGATCAAGACAGCGCCGGGAAGAGGCGGCTTCGTGCGCCAAATATCTTACAAGAATCTGACCTTTGAGAATTGCAGAGTTGGAATTGTCGTCAAAACAGACTACAACCAACACCCTGACGCCGGATACGACCCGAAAGCGCTTCCTCTTCTCGAGGACATAAGCTTCACGGGCGTCCGGGGCCAGGCAGTTCGAGTGCCGGTACGGATTCAAGGCAGCCAGGACATTCCTGTTAGAAATGTGACTTTTAAGGACATGTTTGTCGGATTAATTTCGAAGAGGGTGAAGAAGAAGAAACATATCTTCCAGTGTGCCTTTGTCCGTGGTCAAGTAATAGGGACTATCTTCCCTGCCCCTTGTGAGAACTTTGATCAGTACAATGAACAAGGGCAGCTAGTTAAGCATGCCGTATCATGGAATGTCACAGATATAGATTACCAAATATGA 1548 0.4638 MVEENTTPTSTTKHDFFETQAVLDLKRWFQAIISSHKTLFTLLWLAAFTSAFLWQRDAVSGLVVMHGGGESLKKSESSLLYPKLRPVGFSLVDFGGVGDGVTMNTKAFERAVSEISKLGEKGGGQLNVPPGRWLTAPFNLTSHITLFLHQDAVILGVQDEKYWPLVPALPSYGYGREHPGPRYTSLIHGQNLTDVVITGHNGTINGQGQTWWTKYLQKVLNHTRGPLVQILWSSDILITNITLRDSPFWTLHPYDCKNVTIKNLTILAPVYRFVKQDGEFETRYADSCEDMLIENCYISVGDDAIAIKSGWDQYGIAYGKPSKNIVIRNLVVRSNVSAGISIGSEMSGGVSNVTVENILVWKSRRAIRIKTAPGRGGFVRQISYKNLTFENCRVGIVVKTDYNQHPDAGYDPKALPLLEDISFTGVRGQAVRVPVRIQGSQDIPVRNVTFKDMFVGLISKRVKKKKHIFQCAFVRGQVIGTIFPAPCENFDQYNEQGQLVKHAVSWNVTDIDYQI* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1465 515 Gene3D - 70 474 IPR012334 -
Amo03g1465 515 Pfam Glycosyl hydrolases family 28 184 457 IPR000743 GO:0004650|GO:0005975
Amo03g1465 515 PANTHER PECTIN LYASE-RELATED 29 513 - -
Amo03g1465 515 SMART pbh1 350 371 IPR006626 -
Amo03g1465 515 SMART pbh1 233 263 IPR006626 -
Amo03g1465 515 SMART pbh1 322 344 IPR006626 -
Amo03g1465 515 SMART pbh1 288 309 IPR006626 -
Amo03g1465 515 SMART pbh1 379 400 IPR006626 -
Amo03g1465 515 SUPERFAMILY Pectin lyase-like 80 488 IPR011050 -
Amo03g1465 515 PANTHER PECTIN LYASE SUPERFAMILY PROTEIN 29 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1465 Amo-Chr3 37840202 37843992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1465 30 515 Glycoside Hydrolase AT3G42950 68.293 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1465 - - adu:107479176 993.416