Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0638 ATGGATTCCCAACACAGCGCCGCCACCACCACGACCAACAACACCGACGGTGTTCCACTCGCCGACACAAACGAGTCGGGTCTCTATCCGAATTCCAATGGACCCATAAAGTCAAACTGTGAAAAGGTTGAGACTTTGGGGTGCGCCATTGAGGAAGGCGTAGAGAAAATCAGCTTATTGGGTGCCTCTGAAGCAGAAGTTAAAGCTGAAATTGAAGCCGAGAGTGAAAGTGATGAAGAGTCTGAGAGTTCCACGTCATCATCGTCGGAGTCTTCTTCTTCAAGTTCTGAGGAAAGCGGTAGCGGGGATAATGACAGTGATGACGATGATGATGAGGAGGAGGAAGAGAATGGGGAAGATGCTGATGCTGACGTAGAAGTTGAAGAAGGTGAGATTGATGGTTCCGATGATGACGATGATGGAGAAAAGATGGTTAGTTGGAGCATGGAAGATGATGGTGGTGACGGCGATGATGATGAAGCTGATGTTGGAGGAGGAGAACCCATTAAATCAAAGAATGAACTTGAGGATCTCCCTCCGGTACCCCCTATTAATGTGACCTTAGAACCAAGTCATCAGATGCGGCCAGTGGGAGTTGTTATGTCGAAACTCGGTGCTAAAGTCATTGTGGAAGGAATTGAGAAGCATGATCCTCTTAGCGAAGGTTCTATCCTCTGGATAACTGAAAGTAGAAAACCACTAGGTTTAATTGACGAAATCTTTGGACCAGTCAAAAATCCATATTATGTTGTGAGGTACAATTCCGAAAATGAAGTACCCACTGAGGTCCAAGGGGGAACCTCAATCTCATTCGTCCCTGAATTCGCCAATTATGTGCTTAATAACAAGGATCTTTACAAGAAAGGTTATGATGCATCTGGTGCAAACGACGAAGAGTTGTCCGATGAATTAGAGTTTTCAGATGATGAGAAGGAAGCGGAATACAGGAGAATGCAAAGAATGGCCAAGAGAGGTCCAAATGATCAAAATCCTAGTAAGAGTAAACATAATAAAAAGAAGGTTTCACCACAAAAGCATGCGGTAACTTCCATCCCCAAAGCATCTGCTCCACCTGCCGCAGCACCTCATGATCGCAGAAATTGTTTACCTTTTCCAGGCCAAGGACAAGGCCCTTTTGCCGGAACTTCTGCATTTCCACCATTTCCGATTCCAAACTCAAACGCAGGTCCTAACATCCCACCCAATGGAGTTTGGACAAATGGGGCAACACTTCCGCAGCAGCCATTGCCTACTGTTATTCCTAACGTATTTCCAACGAATGGCATGCCTTGGTGCCCGCAAAACACTCAATTTCCTCATCAGTTGCCAATGGCAATGCCCGGAGTTCCATTTCAACAGCAGTTGCCTCAGGGAGCAATGTTGCCTGGGGTGGTCCAGCAAAATATACTTGCACAAGCCGCCATATATGCGCAGGGGCTTATGGCTCAACACCAAATGGCATTTGGGTTGAACTCCCCACCCTTCCCGCAGATTCAGCAACCACCTATGGTGCAACAGGGTTTTCCACACAATGAATTGTCGGCACAATCTAGTCCTAATCGAGGTGGTCCTCCTCAATTTCATCCGGGTGCATCTGCTAGTAATAATGGAGGGAAAACATTTCATGGTGCTGGTAGGGGTGGTAGGAAAGGATGGAGACCAGCCAAGTGA 1671 0.468 MDSQHSAATTTTNNTDGVPLADTNESGLYPNSNGPIKSNCEKVETLGCAIEEGVEKISLLGASEAEVKAEIEAESESDEESESSTSSSSESSSSSSEESGSGDNDSDDDDDEEEEENGEDADADVEVEEGEIDGSDDDDDGEKMVSWSMEDDGGDGDDDEADVGGGEPIKSKNELEDLPPVPPINVTLEPSHQMRPVGVVMSKLGAKVIVEGIEKHDPLSEGSILWITESRKPLGLIDEIFGPVKNPYYVVRYNSENEVPTEVQGGTSISFVPEFANYVLNNKDLYKKGYDASGANDEELSDELEFSDDEKEAEYRRMQRMAKRGPNDQNPSKSKHNKKKVSPQKHAVTSIPKASAPPAAAPHDRRNCLPFPGQGQGPFAGTSAFPPFPIPNSNAGPNIPPNGVWTNGATLPQQPLPTVIPNVFPTNGMPWCPQNTQFPHQLPMAMPGVPFQQQLPQGAMLPGVVQQNILAQAAIYAQGLMAQHQMAFGLNSPPFPQIQQPPMVQQGFPHNELSAQSSPNRGGPPQFHPGASASNNGGKTFHGAGRGGRKGWRPAK* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0638 556 MobiDBLite consensus disorder prediction 84 100 - -
Amo03g0638 556 MobiDBLite consensus disorder prediction 492 556 - -
Amo03g0638 556 MobiDBLite consensus disorder prediction 101 162 - -
Amo03g0638 556 Pfam Gar1/Naf1 RNA binding region 195 279 IPR007504 GO:0001522|GO:0042254
Amo03g0638 556 MobiDBLite consensus disorder prediction 501 539 - -
Amo03g0638 556 Gene3D Probable tRNA pseudouridine synthase domain 166 272 IPR038664 -
Amo03g0638 556 MobiDBLite consensus disorder prediction 310 335 - -
Amo03g0638 556 MobiDBLite consensus disorder prediction 293 372 - -
Amo03g0638 556 MobiDBLite consensus disorder prediction 67 182 - -
Amo03g0638 556 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 23 537 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Amo03g0638 556 SUPERFAMILY Translation proteins 194 257 IPR009000 -
Amo03g0638 556 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 23 537 - -
Amo03g0638 556 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0638 Amo-Chr3 11885485 11888484 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0638 K14763 - gmx:102660668 476.478