LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo03g0075	ATGGAAGAACCCAAGGCCAGCGGCGACTTCCAGTACCTCTCCGGCTTCGGCAACCACTTGTCGTCGGAGGCCCTCGTCGGAGCTCTTCCGGCCGACCAGAATAGCCCCCTCATCTGCCCCTATGGTCTCTACGCCGAGCAAATCTCCGGCACCTCTTTCACCACCCCTCGCAGCCACAACCTCTTCAGTTGGTTTTATCGGATTAAGCCTTCGGTGACTCACGAACCGTTCAAGGCTCGTGTTCGTTCTAACGAGAGACTTTTGAGCGAGTTCAGCCAATCCAACAGCACTACTAACCCAACTCAACTTCGATGGAAGCCTGTGGAAATTCCTGATTCGCCCACCGATTTCATTGATGGTTTGTTCACTGTTTGTGGTTCCGGCAGCTCCTTCATGCGCCATGGATATGCTATTCACATGTACACTGCCAACAAATCCATGGACAAATGTGCCTTTTGCAATGCTGATGGAGACTTCTTAATTGTTCCCCAACAAGGAAGACTCGTGATCACTACTGAGTGCGGAAGATTAAAAGTTTCGCCTGGTGAAATCGCTATATTACCTCAAGGCTTTCGTTTCACTGTGAGTCTGCCGGATGGCCCATCCCGTGGCTATGTAGGTGAAATTTTCGGTACTCATTTTCGACTTCCGGATCTGGGACCAATAGGTGCTAATGGTCTTGCATCTTCAAGGGATTTCCTTGTTCCTACAGCATGGTATGAAGATAAATTCAATCCTGGGTACACTATAGTGCAAAAGTTTGGTGGTGAACTATTTGTTGCAGTCCAGGATTTCTCTCCCTTCAATGTTGTTGCTTGGCATGGTAATTATGTTCCATATAAGTATGATCTAAACAAATTCTGCCCTTACAATACTGTTCTGTTCGATCATAGTGATCCCTCAATAAACACTGTACTGACTGCACCAACGGATAAACCTGGGGTGGCATTGCTTGATTTTGTAATTTTCCCACCAAGATGGCTAGTTGCTGAGCACACCTTCCGTCCTCCATACTATCATCGCAATTGCATGAGTGAATTTATGGGCCTCGTTTATGGTGGCTATGAGGCTAAGGTCGATGGATTTCTTCCAGGCGGTGCAAGTCTTCATAATTGCATGACTCCGCATGGTCCTGATACGAAGTCGTATGAGGCTACGATTGCACGTGGGAATGATGTAGGACCTTCAAAGATCACAGAAACAATGGCTTTTATGTTTGAATCGTGTTTGATACCCCGCATCACTCCATGGGCTCTACAATCACCATTCTTGGATCATGATTATTACCAGTGCTGGATTGGCCTCAGATCTCACTTTAATCAGAAATCTGAAGTCCCAAACCTGCAGAATAATGGAGAGTAG	1362	0.4677	MEEPKASGDFQYLSGFGNHLSSEALVGALPADQNSPLICPYGLYAEQISGTSFTTPRSHNLFSWFYRIKPSVTHEPFKARVRSNERLLSEFSQSNSTTNPTQLRWKPVEIPDSPTDFIDGLFTVCGSGSSFMRHGYAIHMYTANKSMDKCAFCNADGDFLIVPQQGRLVITTECGRLKVSPGEIAILPQGFRFTVSLPDGPSRGYVGEIFGTHFRLPDLGPIGANGLASSRDFLVPTAWYEDKFNPGYTIVQKFGGELFVAVQDFSPFNVVAWHGNYVPYKYDLNKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLVYGGYEAKVDGFLPGGASLHNCMTPHGPDTKSYEATIARGNDVGPSKITETMAFMFESCLIPRITPWALQSPFLDHDYYQCWIGLRSHFNQKSEVPNLQNNGE*	454

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo03g0075	453	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	7	442	-	-
	Amo03g0075	453	Pfam	Homogentisate 1,2-dioxygenase N-terminal	11	284	IPR046452	-
	Amo03g0075	453	SUPERFAMILY	RmlC-like cupins	9	442	IPR011051	-
	Amo03g0075	453	CDD	cupin_HGO_N	103	211	-	-
	Amo03g0075	453	Gene3D	Jelly Rolls	273	410	IPR014710	-
	Amo03g0075	453	TIGRFAM	hmgA: homogentisate 1,2-dioxygenase	10	439	IPR005708	GO:0004411\|GO:0006559\|GO:0006570
	Amo03g0075	453	Pfam	Homogentisate 1,2-dioxygenase C-terminal	286	439	IPR046451	-
	Amo03g0075	453	PANTHER	HOMOGENTISATE 1,2-DIOXYGENASE	7	442	IPR005708	GO:0004411\|GO:0006559\|GO:0006570

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo03g0075	Amo-Chr3	1525874	1532260	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo03g0075	K00451		-	gmx:100801346	831.632