Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0011 ATGGCAGCATTCTCATGCTCGTGGCTTACCCTTCCCTCCAAAATGAGAAGCCTTTCCCTCACTCCCTCTTCCTTTCCCGTCTCCAATTCCACCTCTCTTGCCTTCTCCAAAAACCTCTCTGACTCTGCTTTCTCACATGGCAGCTTATCGGTGAGCATAATGCAAAAACAAACTCGGCGTTCAGCGGTTGTTTGCGAGGCGGCGCCACAACGAAAGGCCGATTCGGCAGTAAAGAGAGCACGCTTGGCTGAGAAACGCCGCATTTACAACAAAGCCCGCAAATCAGAGATAAGAACCCGAATGAGGAAGGTATTAGAAGCTCTGGAAGTGCTTAGGAAGAAATCCGATGCGCAAGCTGAAGAAATAGTTCCTATTGAGAAACTAATTGGAGAGGCATACTCAGTAATTGACAAAGCAGTGAGAGCAGGCACGCTACATAGGAACACCGGAGCAAATCGCAAATCTCGACTTGCCAGAAGAAAGAAATTGGTTGAGATCCACCATGGGTGGTATACTCCAGCAGCTTCTGAAGTGGTTGTATGA 543 0.4825 MAAFSCSWLTLPSKMRSLSLTPSSFPVSNSTSLAFSKNLSDSAFSHGSLSVSIMQKQTRRSAVVCEAAPQRKADSAVKRARLAEKRRIYNKARKSEIRTRMRKVLEALEVLRKKSDAQAEEIVPIEKLIGEAYSVIDKAVRAGTLHRNTGANRKSRLARRKKLVEIHHGWYTPAASEVVV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0011 180 Hamap 30S ribosomal protein S20 [rpsT]. 54 163 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo03g0011 180 PANTHER 30S RIBOSOMAL PROTEIN S20 1 177 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo03g0011 180 PANTHER 30S RIBOSOMAL PROTEIN S20, CHLOROPLASTIC 1 177 - -
Amo03g0011 180 SUPERFAMILY Ribosomal protein S20 74 175 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo03g0011 180 Pfam Ribosomal protein S20 74 160 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo03g0011 180 Gene3D Ribosomal protein S20 73 180 IPR036510 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Amo03g0011 180 TIGRFAM S20: ribosomal protein bS20 72 159 IPR002583 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0011 Amo-Chr3 294137 296472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0011 K02968 - gmx:100499656 256.144