Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g2505 ATGGCGGTGGTTGGTGTGCTTGCGCTACAGGGATCCTTCAATGAACACATTGCTGCTCTTAGGAGGTTAGGTGTGAAAGGTGTTGAGATTCGGAAGCCAGAGCAGCTTCAAAGTGTGTCTTCACTTATCATCCCTGGCGGAGAGAGCACCACCATGGCCAAGCTCGCTGAGTATCACAACCTGTTTCCTGCATTGAGGGAGTTTGTCGAAATGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAAAGCAACAGGACAGAAGACTGGTGGACAAAAACTGGTTGGTGGACTTGATTGTACTGTGCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTTGAAGCTGACCTTCCGGTGCCAGAGCTTGCATCCAAGGAAGGTGGTCCTGAAACATTCCGTGGAATTTTTATCCGTGCTCCGGCAATTCTTGAAGCAGGGCCAGAAGTTCAAGTTCTGGCAGATTATCCTGTCCCTTCTAACAAATTCTTGGATTCTGATTCCTTCATTGAAGACAAAAAGGAGAATGCCGAGGAAGGCGGCAAAGTCATAGTTGCAGTCAGACAAGGAAACATTCTAGGGACTGCTTTCCATCCGGAATTGACAGCCGATACTCGATGGCATAGTTATTTCATAAAAATGTCAAATGCAAATGTTGGGGAAGAAGCCTCAAGTAGTAGCCTTGTTCCAGCAGAGGTCGACATAACTTCTAACCAACAACCGCGCAGTGACCTTCCTATCTTTCAATAG 765 0.4667 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLQSVSSLIIPGGESTTMAKLAEYHNLFPALREFVEMGKPVWGTCAGLIFLANKATGQKTGGQKLVGGLDCTVHRNFFGSQIQSFEADLPVPELASKEGGPETFRGIFIRAPAILEAGPEVQVLADYPVPSNKFLDSDSFIEDKKENAEEGGKVIVAVRQGNILGTAFHPELTADTRWHSYFIKMSNANVGEEASSSSLVPAEVDITSNQQPRSDLPIFQ* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g2505 254 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 226 - -
Amo02g2505 254 CDD GATase1_PB 4 217 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 Gene3D - 1 230 IPR029062 -
Amo02g2505 254 ProSiteProfiles PdxT/SNO family profile. 3 221 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 MobiDBLite consensus disorder prediction 235 254 - -
Amo02g2505 254 SUPERFAMILY Class I glutamine amidotransferase-like 3 219 IPR029062 -
Amo02g2505 254 Pfam SNO glutamine amidotransferase family 6 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
Amo02g2505 254 PANTHER - 2 253 - -
Amo02g2505 254 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 253 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 PIRSF Glut_amidoT_SNO 1 224 IPR002161 GO:0004359|GO:0042819|GO:0042823
Amo02g2505 254 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 219 IPR002161 GO:0004359|GO:0042819|GO:0042823
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g2505 Amo-Chr2 78715800 78719925 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g2505 K08681 - gmx:100786227 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2267 12 102895152 102899239 Amo02g2505 02 78715800 78719925 hybridization