Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0479 ATGCTTGGCAGTCACAATATCAGATCTGAATTTGGATTTAAACCTTATAATTGCAATCATGATTTTGTCCATCATTCCACGCCTCTCTACAGCTTCTTGTCCATCAGACCCCCACTCATATTTTCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCATTTGGCTATGAAAAGCGAAGGCTCTCTGTTGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCACAAAAACCCTATTTGTGA 306 0.4314 MLGSHNIRSEFGFKPYNCNHDFVHHSTPLYSFLSIRPPLIFSGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPQKPYL* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0479 101 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 38 98 IPR029537 GO:0000398|GO:0005681
Amo02g0479 101 MobiDBLite consensus disorder prediction 80 101 - -
Amo02g0479 101 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 81 IPR000504 GO:0003723
Amo02g0479 101 Gene3D - 36 100 IPR012677 -
Amo02g0479 101 SUPERFAMILY RNA-binding domain, RBD 42 91 IPR035979 GO:0003676
Amo02g0479 101 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 67 IPR000504 GO:0003723
Amo02g0479 101 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 38 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0479 Amo-Chr2 5812631 5813185 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0479 K12893 - gmx:100797709 100.523