Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0400 ATGACTGGTGCAGTTGTTGGTGAAGCTTTCCTTTCTGGCTTCATTAAAGTTGTCTTTCAAAGGTTGCTCACAACGGATACGGTCAACCAGGTCTTGGGCAAGAAGCTTGGCTCTGGCTTGGTTGAGAGGCTGAAAATTTCTCTGCATGCTGCTGAAGCTGTGCTTGATGATGCTGAGTACAAGCAACTGGGCGACGATCGTGTGAGGGATTGGCTCAACTGTCTCAGAGAGGCTGTTTATGACGCTGATGACTTGCTGGACGCTGTACTCACCAAAGCCGCCATTCAAAAGGAGGTACGTTCTTGGTTGCCTAGTTTCTTCCTCAACCGACATAGGAAGATGGTAGATAACATGGAGGAGGTGGTTGAAAGAATAGAATTTCTTGTAAGTCAAAAAGATATCCTTGGTCTTCAAAGGAGTACCAACGATTTGAAGACCAAGGATAATAACTTGTCATCATCATCGTCATCATGGCGAGAAACCACATGTCTGATGGAAGGGAAGATATATGGCAGGGAGGATGATCAACAAGCTTTAATCAAAATAATACATGACAGGAGTGAATCTCAGTTATCTGTGATTCCGATTGTTGGCATGGGCGGGGTTGGTAAAACAACCTTAGCCAAATGGGCGTACAGTGTCGCGGAAGGGTTTGATCTGAAAGCATGGGTCTGCATCTCTGAAACATTTGATGTTGCTGATATTACAAAGAAAACCATTGAGGAGATTACTACAGATTCTTGTAGCCTTGGGAGTTTAAATTTGCTTCAAAATGAATTGCAGAAAATCTTGTCGGGAAAGAAGTTCTTTATTGTTCTAGACGATGTCTGGAGCGATGATGCCGATAAGTGGAAGCAATTTATAACTCCTTTTCACTGTGGGGCTAAGGGTAGTACAATTCTTATTACTACTGTGGCAGCCAATGCATGTTTTCCGGAGTCAAATGGGAACCCAATACTAGAGGAAATCGGTAGAAAGATTGTCAAGAAGTGTAAAGGGTTGCCATTAGCTGTTGAAACACTTGGGCGCTTGTTGCAAGGAGAGGATGATGCTGAAGAATGGAATGCTGTTTTAAGGAGTGACATCTGGGAATTTCCCATGAAAGATAGTAAAATTATTCCAGCATTGTTAATAAGCTACTTCCAGCTACCTCCTTACTTGAAGCGTTGTTTCGTTTATTGTTCCTTGTTTCCCAAAGATCATGAGTTTGAGAAAAATGAACTAGTTTTGCTGTGGATGGCTGAAGATCTTTTAAGGCTACCAAAGAGAGGAGAGAGTTTAGAAGAGGTTGGTTCTCAGTGTTTTGAAGAATTAGCTTCGAGGTTATTTTTTAAACCAGCTAAGTATCCTTCTGAGAGGTACGTGATGCATGATCTCTTGCATGACTTGGCAGTATTCCTTGCTGGAGACTTCTATTGTAGAATAGAAAAGCTTGGTGAACAAGAAGAAAAGGTTCTCACTCGCCATTTCTCATATTTCCCACCTGCAATCTTATATCATTCATTGTCAAAACTCTTTAAGTCCACTGTGAAAGCTTTGAGGGCATCAGAATCTTTGAGGACATCGTTGTATATCGATGATTTGTTAAGCATGGAAAGCAGAGCATCAAAGTTGAAATACTTGAGAGTTTTATCCTTTCTTGATCTTGATGCATTACCAGGTTCAATAGGTGAATTGATTCATCTACGCTATTTGAATCTCTCTGGGACCGATGTGGAGACATTACCAGAGTCATTATGCAACTTGTATAATCTACAAACATTAATATTGTATAAATGTCGTTCCCTGACCATGTTGCCCAATGGCATGCATAAACTTGTGAATTTACGGCATCTTGATCTTAGGGGAACTTGTTTGAAAGAAATGCCTAGAGGAATAAGTAAATTGAAACACATGCCTATTTTAGATTACTTTGTGGTGGGCAAGCACAAAGACAATGGAATCCAGGAATTAGGAGGGCTCTCAAATCTTGAAGGATCATTTGAGATTAAGAGGTTGGAGAATGTTGCTGATGTCAGACAAGCCAAGAGTGCAAGGATGTTGGAGAAGAACCACATTGACAACTTATTGTTGGAATGGTCTTGGGATCGTGAGATGGTTTCAAACACAGAGACTGAGAGAGATATACTCGACGGCTTGCAACCGCACACTGGCTTGAAAGAGTTGAGGATCGAGGGATATATGGGCAAAAGATTTCCAGATTGGGTGGGACACTGTTCTTACAACAATATGACAAGTGTAAGACTAGCATCTTGCAACAATTGCTGCATGCTGCCTTCACTTGGACAACTGCCATCTCTAAAGTCCCTGCGCATTGAAGGTTTTGATCAGCTCAAGCGTATTGGTGATGAGTTTTACAAGAGTGACAACGAGCATCATTCCTCGCCTATTGCACCGTTTCCTTCACTCGAGGAATTGGTGTTTCATAACATGCCATGCTGGGAGGAGTGGCACGTACCTCACCCAGAAGCTTTTCCTCAGCTTAAGATACTTCAAATAGAACGTTGTCCAATGTTCAAGGGAGATGTGCTTAATGGCTGCACCACAACCATCAACCATCAACCACACGCTGCTCTTCAACGTCTCATAATCAGTGGGACAGGAGAAGGAGTGGCTGCACCCAACTTGACTCATCTCAGCCTCATACAATGCTACAAGTTGGAGGCCTTACCACCTGACATGAATAGTCTATTCCCAAGTTTACACTCTCTCGACATACGGGGTTCCTCAAACATTTGTAGGTTGCCAAAGGGTGGTTTGCCGCCTAACTTGAAAGAGCTTACTGTGGGAGATTGCGAGGAACAAATGAGGGATCTATCATGGATGGGCAACTTGGACGCCCTCACTCATCTCACAATTAATGGTTCTAGGTGTAAGAACATAAAGTCATACCCAGAGGTGGGTTCGCTGCCTCACCTTCCCTCCCTTACCACTCTTGAGATAGGGGGGTTTGATAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCGCCTCACCTCCCTTCAACAACTACACATTCATTGGTGTCCAAAGCTGGAGAATATGGAAGGAGAAAAGCTGCCTCCCTCTCTCTTGCTACTTCAACTTACAATGTGTGGTTTGCTGGGAGAACACTGCAAGAACAAGCATCAACTAATCTGGCCCAAAATTTCCCACATCCCTGACATTCAAGTCAATGGCATCAAAATTTCCTGA 3195 0.4297 MTGAVVGEAFLSGFIKVVFQRLLTTDTVNQVLGKKLGSGLVERLKISLHAAEAVLDDAEYKQLGDDRVRDWLNCLREAVYDADDLLDAVLTKAAIQKEVRSWLPSFFLNRHRKMVDNMEEVVERIEFLVSQKDILGLQRSTNDLKTKDNNLSSSSSSWRETTCLMEGKIYGREDDQQALIKIIHDRSESQLSVIPIVGMGGVGKTTLAKWAYSVAEGFDLKAWVCISETFDVADITKKTIEEITTDSCSLGSLNLLQNELQKILSGKKFFIVLDDVWSDDADKWKQFITPFHCGAKGSTILITTVAANACFPESNGNPILEEIGRKIVKKCKGLPLAVETLGRLLQGEDDAEEWNAVLRSDIWEFPMKDSKIIPALLISYFQLPPYLKRCFVYCSLFPKDHEFEKNELVLLWMAEDLLRLPKRGESLEEVGSQCFEELASRLFFKPAKYPSERYVMHDLLHDLAVFLAGDFYCRIEKLGEQEEKVLTRHFSYFPPAILYHSLSKLFKSTVKALRASESLRTSLYIDDLLSMESRASKLKYLRVLSFLDLDALPGSIGELIHLRYLNLSGTDVETLPESLCNLYNLQTLILYKCRSLTMLPNGMHKLVNLRHLDLRGTCLKEMPRGISKLKHMPILDYFVVGKHKDNGIQELGGLSNLEGSFEIKRLENVADVRQAKSARMLEKNHIDNLLLEWSWDREMVSNTETERDILDGLQPHTGLKELRIEGYMGKRFPDWVGHCSYNNMTSVRLASCNNCCMLPSLGQLPSLKSLRIEGFDQLKRIGDEFYKSDNEHHSSPIAPFPSLEELVFHNMPCWEEWHVPHPEAFPQLKILQIERCPMFKGDVLNGCTTTINHQPHAALQRLIISGTGEGVAAPNLTHLSLIQCYKLEALPPDMNSLFPSLHSLDIRGSSNICRLPKGGLPPNLKELTVGDCEEQMRDLSWMGNLDALTHLTINGSRCKNIKSYPEVGSLPHLPSLTTLEIGGFDNLETLECNELLRLTSLQQLHIHWCPKLENMEGEKLPPSLLLLQLTMCGLLGEHCKNKHQLIWPKISHIPDIQVNGIKIS* 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0400 1064 PANTHER DISEASE RESISTANCE PROTEIN RP 39 844 IPR044974 GO:0006952
Amo02g0400 1064 Gene3D - 379 465 IPR036388 -
Amo02g0400 1064 Gene3D - 154 306 IPR027417 -
Amo02g0400 1064 PRINTS Disease resistance protein signature 193 208 - -
Amo02g0400 1064 PRINTS Disease resistance protein signature 263 277 - -
Amo02g0400 1064 PRINTS Disease resistance protein signature 580 596 - -
Amo02g0400 1064 Coils Coil 41 61 - -
Amo02g0400 1064 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 394 IPR027417 -
Amo02g0400 1064 SMART LRR_typ_2 559 582 IPR003591 -
Amo02g0400 1064 SMART LRR_typ_2 606 629 IPR003591 -
Amo02g0400 1064 Gene3D - 18 135 - -
Amo02g0400 1064 Gene3D Ribonuclease Inhibitor 857 1044 IPR032675 -
Amo02g0400 1064 Gene3D Ribonuclease Inhibitor 501 856 IPR032675 -
Amo02g0400 1064 SUPERFAMILY RNI-like 800 1041 - -
Amo02g0400 1064 Pfam Rx N-terminal domain 39 97 IPR041118 -
Amo02g0400 1064 Gene3D - 307 378 IPR042197 -
Amo02g0400 1064 PANTHER OS05G0414200 PROTEIN 39 844 - -
Amo02g0400 1064 Pfam NB-ARC domain 173 305 IPR002182 GO:0043531
Amo02g0400 1064 Pfam NB-ARC domain 311 359 IPR002182 GO:0043531
Amo02g0400 1064 SUPERFAMILY L domain-like 455 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0400 Amo-Chr2 4928910 4935310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0400 551 636 Receptor kinase-like Gene Family AT2G23950 34.091 3.60e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0400 - - ahf:112761902 2096.24