Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0195 GCACGTCTCGAAAGCAAGATTTTCAATGTTAAAAGCTATGGAGCAGTTGCTAATGGCAACACTGATAATAGTGTGGCATTTTTGAAAGCATGGAATGATGCATGCAATTGGAATGGAAAGGCACAAGTTTTTATTCCAAAAGGAACATATATGCTGAATTCAATTGTGTTCAAAGGGCCATGCAAGGCTTTGAGGATGGGTTTTGTGATCAAAGGGATTTTGAAGGCACCACCATATCCATCTTTATTCAACACTGATAAATGGATAGGTTTTTTGTATGTTAACAAACTCACATTGAGTGGTGGTGGCACATTGGATGGTCAAGGAGCTTCTTCATGGCCTCACCATAATTGCAACAAGGATCCACATTGCCCAACTCTTCCTATAACAGTGAGGTTTGACTTCATCAACAATGGTAAAATCCATGACTTGAAATCAATTAACCCTAAAGGTGGACACTTTATGATATTTGGAAGTGAAAATGTGAAATTGGAAAGGCTAAAGATATCAGCACCTGGGGATAGCCCTAACACTGATGGCATCAAAATTGGTGAATCCAATAATATAAACATCACAAGTGCTACTATAGCCACTGGTGATGATTGCATTGCTATGATTTCTGGTGCTAAGAACATTACCATCTTTGGTGTTCATTGTGGCCCTGGCCATGGAATTAGTGTTGGAAGCCTTGGAAAAAATGATGGAGAAAAAGATGTTCAAAACATTGTTGTGAAGAATTGCACATTTAATGGTACTAGTAATGGCCTTAGAATCAAAACTTGGGCTGCTTCTTTGAGTAAACCTCTTAGGGCTTCTAATTTTCTCTTTCAAGACATTTTCATGGATAAAGTTTTTAGTCCTATTATCATTGATCAAGCTTATTGTCCAAGTCATGGTTGTAGCAATCAGGTGGCTTCAAGTGTTCAAATCAGTGATGTGACATACAAGAACATTAAAGGAAGTGGAAGTTCTGAGATTGGAGTAGAATTGAATTGCAGCAAAAGGAAGCCATGCCAGAACATAACAAGGGTGGACATAAATTTGTGGCCTTATGGTGGCAAAGGACAACTCAAGTCTTTGTCTTCTTTTGTCAATGGTGCTTGTTATGGCCAACAGATTCCCCCATCTTGTGTTGGTTAA 1140 0.3868 ARLESKIFNVKSYGAVANGNTDNSVAFLKAWNDACNWNGKAQVFIPKGTYMLNSIVFKGPCKALRMGFVIKGILKAPPYPSLFNTDKWIGFLYVNKLTLSGGGTLDGQGASSWPHHNCNKDPHCPTLPITVRFDFINNGKIHDLKSINPKGGHFMIFGSENVKLERLKISAPGDSPNTDGIKIGESNNINITSATIATGDDCIAMISGAKNITIFGVHCGPGHGISVGSLGKNDGEKDVQNIVVKNCTFNGTSNGLRIKTWAASLSKPLRASNFLFQDIFMDKVFSPIIIDQAYCPSHGCSNQVASSVQISDVTYKNIKGSGSSEIGVELNCSKRKPCQNITRVDINLWPYGGKGQLKSLSSFVNGACYGQQIPPSCVG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0195 379 SUPERFAMILY Pectin lyase-like 4 378 IPR011050 -
Amo02g0195 379 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 7 349 - -
Amo02g0195 379 SMART pbh1 159 185 IPR006626 -
Amo02g0195 379 SMART pbh1 239 260 IPR006626 -
Amo02g0195 379 SMART pbh1 305 332 IPR006626 -
Amo02g0195 379 SMART pbh1 186 207 IPR006626 -
Amo02g0195 379 SMART pbh1 209 229 IPR006626 -
Amo02g0195 379 Pfam Glycosyl hydrolases family 28 35 350 IPR000743 GO:0004650|GO:0005975
Amo02g0195 379 Gene3D - 1 373 IPR012334 -
Amo02g0195 379 PANTHER - 7 349 - -
Amo02g0195 379 ProSitePatterns Polygalacturonase active site. 216 229 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0195 Amo-Chr2 2186284 2188959 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0195 4 377 Glycoside Hydrolase AT2G33160 48.541 3.30e-122 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0195 K01213 - gmx:100810484 457.988