Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0166 ATGCAAGCACAACTCTTTTCACTCGCACACTGCACTCTACCTGTGTCCAGATTCCCAAACAATGCAACTCCTCCAAATTTTGCAACTTTTCAACAATCCCATCACTCCTCCAAGCTCAGTTTCAATGTGGGTCTCAATCATTTGCTTCAAAAATCTAATTTTTTTCAAAGCGTACCTGGTTTGATGAGTAGCTGTGATGGTTATGTGGGTGTAGTAGCAGAATGTGGTCCCTTTAATGGAGAAAGTGATGTTGGCGATTGTGATGATGGGTTTTACATAAGAAGGTGTGTTGAGCTTGCAAGAAAAGCTATTGGCTTCACAAGCCCCAATCCAATGGTGGGGTGTGTTATTGTGAAGGATGGGAAAATTGTTGGTCAAGGGTTCCACCCTAAAGCAGGTCAACCGCATGCTGAGGTGTTTGCCTTGAGAGATGCTGGCGATTTGGCGGAGAATGCCACGGCTTATGTGAGCTTAGAACCTTGTAATCATTTTGGAAGGACTCCACCTTGCACTGAAGCTTTAATCAAAGCCAAAGTGAAAAAAGTGGTGGTTGGGATGGTGGATCCAAATCCCCTTGTGGAATCCAAAGGGTTGGCTAGATTGAGAGATGCAGGTATTGAAGTTGTTGTCGGTGTAGAGGAAGAGTTATGCAAGAGCCTTAACGAGGCCTTTGTTCATCGCATGTTAACCGGAAAACCTCTCCTTACATTGAGATATTCTCTTTCTGTCAATTGGAATTTTTCAGACTTACTTGGAGATGGAGTTACAGAATGTGGTGGATACTATTCACGTTTATTGCAAGAATATGATGCAGTGATACTTTCCTCTTCCTTATTCAGTGGGAACATATCAATACCTGCATCTCAAGAACCTGGAGCAAATCAGCCGCTCCGGATTGTAATACATAAGGATTCTAGTTCTTCAAATGAAATTCCACTTGCTGTCAATGAAGTTACTGATAAAGTGATAGTTTTTACTGATAATGGAACAGCAACCACTCTAGAACTGGCCGGAAAAGGAATTGAAACCGTCATTTTGGATCAGATAAATCTAGATGTGATTCTGGACTATTGTAATCGACAAGGGATGTGCAGTGTTCTGTTAGATTTGAGGGGAAATTCCAGCGAGTTTGAAGAGTTTGTTAAGGAGGGAATTCAGAAGAAAAACATTAGTAAATTTATGATAGAAATTTTACCTATTTGGAATAGAGGTAGTGAGACAGATCCTCTAATACCGGTAAAAAGGTTAGATCAAGGAATCCAAGTGGAAAATTTGAAGTCCAAGTGTTCAGATCAAAATGTTATAATTGAAGGACATTTTAAATTTTAA 1329 0.4033 MQAQLFSLAHCTLPVSRFPNNATPPNFATFQQSHHSSKLSFNVGLNHLLQKSNFFQSVPGLMSSCDGYVGVVAECGPFNGESDVGDCDDGFYIRRCVELARKAIGFTSPNPMVGCVIVKDGKIVGQGFHPKAGQPHAEVFALRDAGDLAENATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVVGMVDPNPLVESKGLARLRDAGIEVVVGVEEELCKSLNEAFVHRMLTGKPLLTLRYSLSVNWNFSDLLGDGVTECGGYYSRLLQEYDAVILSSSLFSGNISIPASQEPGANQPLRIVIHKDSSSSNEIPLAVNEVTDKVIVFTDNGTATTLELAGKGIETVILDQINLDVILDYCNRQGMCSVLLDLRGNSSEFEEFVKEGIQKKNISKFMIEILPIWNRGSETDPLIPVKRLDQGIQVENLKSKCSDQNVIIEGHFKF* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0166 442 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 92 186 IPR002125 -
Amo02g0166 442 CDD Riboflavin_deaminase-reductase 93 205 - -
Amo02g0166 442 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 136 174 IPR016192 GO:0008270|GO:0016787
Amo02g0166 442 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 87 209 IPR002125 -
Amo02g0166 442 SUPERFAMILY Dihydrofolate reductase-like 261 436 IPR024072 -
Amo02g0166 442 Gene3D Dihydrofolate Reductase, subunit A 227 440 IPR024072 -
Amo02g0166 442 Gene3D Cytidine Deaminase, domain 2 85 226 - -
Amo02g0166 442 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 87 278 - -
Amo02g0166 442 SUPERFAMILY Cytidine deaminase-like 89 228 IPR016193 GO:0003824
Amo02g0166 442 TIGRFAM eubact_ribD: riboflavin biosynthesis protein RibD 94 384 IPR004794 GO:0008835|GO:0009231
Amo02g0166 442 PANTHER RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC 87 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0166 Amo-Chr2 1945922 1948119 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0166 K11752 - gmx:100786393 601.668