Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0133 ATGTCCTCCCCAAGCAAGCGGCGAGAGATGGACCTTATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATCAATGATGGAATGCAAGAGTTTTATGTCCATTTCAATGGACCTAATGAGAGTCCTTATCATGGAGGTGTTTGGAAAGTAAGAGTTGAGCTGCCAGATGCTTATCCTTATAAATCTCCTTCCATAGGCTTTGTTAATAAGATCTATCATCCAAATGTCGATGAGATGTCAGGATCGGTTTGTCTAGATGTTATCAATCAAACCTGGAGCCCCATGTTTGATCTTGTCAATGTGTTTGAGGTTTTTCTTCCACAACTTCTGTTATATCCGAATCCATCAGACCCCTTGAATGGAGAAGCTGCTGCTTTAATGATGCGTGATCGAGCTTCTTATGATCAAAGGGTTAAAGAATATTGTGAGAAGTATGCTAAGGCTGAAGACATAGGAGATGCAACAGAAGACAAGTCTAGTGATGATGAGGAACTAACTGAAGATGAATATGATTCAAGTGATGAACAAGTGGCTGGTAAGGCAGATCCATAG 555 0.409 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFNGPNESPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRASYDQRVKEYCEKYAKAEDIGDATEDKSSDDEELTEDEYDSSDEQVAGKADP* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0133 184 MobiDBLite consensus disorder prediction 156 173 - -
Amo02g0133 184 Pfam Ubiquitin-conjugating enzyme 10 142 IPR000608 -
Amo02g0133 184 SUPERFAMILY UBC-like 4 148 IPR016135 -
Amo02g0133 184 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Amo02g0133 184 Gene3D Ubiquitin Conjugating Enzyme 1 161 IPR016135 -
Amo02g0133 184 SMART ubc_7 4 148 - -
Amo02g0133 184 CDD UBCc 7 143 IPR000608 -
Amo02g0133 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 184 - -
Amo02g0133 184 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Amo02g0133 184 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 184 - -
Amo02g0133 184 MobiDBLite consensus disorder prediction 150 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0133 Amo-Chr2 1498685 1501706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0133 3 115 Miscellaneous Gene Families AT3G17000 23.140 3.50e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0133 K10576 - gmx:548025 362.844