Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0125 GCTTTTGTTCCAATCCCTAATGAACCCAACTTCAGGGACCCTGAAATTGTTCATTTGTTTTGTGCTAAAGCCCTCAAAGTTGCTGCTATAAGGGCTTTTCTCCCTGAAGGGAAACAGTTGCATGCCCATTTGATAAAGTTTGGTTTTTGTCATGTTCTGTCATTGCAAAATCAGTTCTTGAGTATTTACCTTAAATGCAAGGAAACCAAAGATGCACTTAAACTGTTTGATGAATTGCCTGGGAGAAATGTGGTCTCGTGGAATATTGTGATCCGTGGCATTGTTGGATGTGGAAATGAAAATGACTTGAATCCTCATCTGGGGTTTTCTTATTTCAAGCGGATGTTGTTCGAAAAGGTGGCTCCGGATGATATAACATTGAATGCTTTGATTGGTGTGTGTGCAAAGCTTCATGATATCGAAATTGGAGTACAACTGCACTGTTTTGCAATGAAAAGAGGACTTGATTTGGATTGTTTTGTAGGTAGTGCTTTGGTTGATTTTTATGCAAAATTTGGTTTGGTTGAGAATTCAAGGAAGGTTTTTTGTGCTGTTACACATAGAGATTTGGTTATGTTGAATGTCATGATTTCTTGTTATGCCCTGAATTGTTTACCAGAAGAGGCCTTCAGGATTTTCAACTCAATGAGATCGGGTGGTGCTAATGGCGACGAATTCACTTTTAGCAGCCTGCTAAGTATATGTGATATTTTAGAATATTATGATTTTGGAAAGCAAGCTCATAGTCTTATTCTGAAACTGTCATTTGAATCCGATATTCTAGTGGCGAGTGCATTAATCAATATAGTATTTGACAAGATGGCGATTCAAAATGTTGTGGCATGGAATACCATGATTGTTGGGTGTGGAAATAATGGCGAAGTGATTGATGTTATGAAGATTCTCAGAGATATGTTACTCGAAGGAATTTTCCCCGATGAACTCACTATTTCCAGCGTTCTTAGCTCGTGCGGCTATGCTTCTGCCATAACTGAAACTCAGCAAGCTCATGCCTTAGCAGTTAAGCTGTCATTTCAAGAATTTTTATCTGTTTCCAATTCTTTGATTACTGCATACTCCAAGTGTGGTAACATAACTAATGCATTCAAATGCTTCAGATTGATGTTAGAACCTGATCTTGTTACATACACTTCACTGATAAATGCATATGCATTCCATGGTCTTGGCAAAGAAGCAATTGAGATGTTTCAGAAGATGATATCTTGCGGCATAAAACCTGACCGGATTTCTTTTCTTGGCATTCTCTCTGCTTGTGTGCATTGTGGATTCGTGAACGCAGGACTGCACTACTTCAAATTAATGACAGATGTGTATCATATTATTCCTGATTCAGATCACTATACTTGCCTTATTGATCTCCTTGGAAGACATGGTTTCATAAGCGAAGCCTTTGAATTCTTGAAATCAATTCCAATTCAAGCTGAATCGAACATGTTAGGAGCATTCATTGGGTCTTGTAAACTTCATGAAAATATAGAACTGGCTAAATCAGCAGCAGGAAAGCTTTTTGCCATAGAGCCAGAGAAGATTGTGAACTATGCTGTCATGGCTAACATTTATGCTTCTCATAATCACTGGCTTGATGCCGAAAGAGTTCGAAAAACCATGAGGGACAAGAATGTTGCTAAATTCCCAGGCTGTAGCTGGATACAGGTTGGTAATCAAGTTCATTCATTTGTGTCTAGTGATAAGGTACACCCTAAACTTTTGCAAATTTATGCTACACTAAAAATGTTGCTTAGGTCAATGAAAGAAGAAAATGGTAATTATTTTAAGTTACCTCGGAGACCCATACCATGTCCTGTTGCTAAGGAATCATTGACTCCTCCTAAGCATACACTACTTGATTCAGAAAAACTTAGTAGTTCACTACACTGCAACCATTATATCCTTGGTCTTCAAAAGACTACCAAGGATAATAACTTGTCATCATCATCATCATCATGGCGAGAAACCACATGTCTGATGGAAGGGAGCATATATGGCAGGGAGGATGATCAACAAGCTTTAATCAAAACAATAAATGACAACAGTGAATCTCGGTTATCTGTGATTCCTATAGTTGGCATGGGTGGGGTTGGTAAAACAACCTTAGCCAAATGGGCATACAGTGTCGCCGAAGGATTTGATCTCAAAGCATGGCACCTTGATCTTAGGAGTACTTCTTTGAAAGAAATGCCTGGAGGAATAAGCAAATTGAAGCACTTGTCTATTTTATATTATTTTGTGGTGGGCAAGCAGAAAGACTGTGGAATCCAGGAATTAGGAGGGCTCTCAGACCTTAAAGGATCATTTGAGATTCTGAAGTTGGAGAATGTTGTTGATCAACAAACGAGGGATCTATCATGGATGGCCAACTTGCACGCCCTCACTCATCTTGAAATTTATGCTTCTCCGCCTCACCTCCCTCCAACAACTACACATTTATCGGTGAGTGTGAACATCTTTTTTGTTGAAAAGATTCTTTTTTTGTTGTTGGTATGTTTCTCTCTTCCTCTCTATAATTTTATTTTTCCTGTTTTGCACAGAAAAAAATAA 2559 0.3853 AFVPIPNEPNFRDPEIVHLFCAKALKVAAIRAFLPEGKQLHAHLIKFGFCHVLSLQNQFLSIYLKCKETKDALKLFDELPGRNVVSWNIVIRGIVGCGNENDLNPHLGFSYFKRMLFEKVAPDDITLNALIGVCAKLHDIEIGVQLHCFAMKRGLDLDCFVGSALVDFYAKFGLVENSRKVFCAVTHRDLVMLNVMISCYALNCLPEEAFRIFNSMRSGGANGDEFTFSSLLSICDILEYYDFGKQAHSLILKLSFESDILVASALINIVFDKMAIQNVVAWNTMIVGCGNNGEVIDVMKILRDMLLEGIFPDELTISSVLSSCGYASAITETQQAHALAVKLSFQEFLSVSNSLITAYSKCGNITNAFKCFRLMLEPDLVTYTSLINAYAFHGLGKEAIEMFQKMISCGIKPDRISFLGILSACVHCGFVNAGLHYFKLMTDVYHIIPDSDHYTCLIDLLGRHGFISEAFEFLKSIPIQAESNMLGAFIGSCKLHENIELAKSAAGKLFAIEPEKIVNYAVMANIYASHNHWLDAERVRKTMRDKNVAKFPGCSWIQVGNQVHSFVSSDKVHPKLLQIYATLKMLLRSMKEENGNYFKLPRRPIPCPVAKESLTPPKHTLLDSEKLSSSLHCNHYILGLQKTTKDNNLSSSSSSWRETTCLMEGSIYGREDDQQALIKTINDNSESRLSVIPIVGMGGVGKTTLAKWAYSVAEGFDLKAWHLDLRSTSLKEMPGGISKLKHLSILYYFVVGKQKDCGIQELGGLSDLKGSFEILKLENVVDQQTRDLSWMANLHALTHLEIYASPPHLPPTTTHLSVSVNIFFVEKILFLLLVCFSLPLYNFIFPVLHRKK* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0125 852 TIGRFAM PPR: pentatricopeptide repeat domain 381 414 IPR002885 -
Amo02g0125 852 TIGRFAM PPR: pentatricopeptide repeat domain 192 220 IPR002885 -
Amo02g0125 852 TIGRFAM PPR: pentatricopeptide repeat domain 280 314 IPR002885 -
Amo02g0125 852 Pfam PPR repeat family 278 324 IPR002885 -
Amo02g0125 852 Pfam PPR repeat family 189 233 IPR002885 -
Amo02g0125 852 Pfam PPR repeat family 378 426 IPR002885 -
Amo02g0125 852 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 662 729 IPR027417 -
Amo02g0125 852 Pfam NB-ARC domain 671 721 IPR002182 GO:0043531
Amo02g0125 852 Gene3D Tetratricopeptide repeat domain 94 259 IPR011990 GO:0005515
Amo02g0125 852 Gene3D Tetratricopeptide repeat domain 347 579 IPR011990 GO:0005515
Amo02g0125 852 Pfam PPR repeat 59 83 IPR002885 -
Amo02g0125 852 Pfam PPR repeat 453 476 IPR002885 -
Amo02g0125 852 Pfam PPR repeat 353 377 IPR002885 -
Amo02g0125 852 PANTHER OS07G0578800 PROTEIN-RELATED 10 580 IPR045215 GO:0003723|GO:0009451
Amo02g0125 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Amo02g0125 852 Gene3D - 653 743 IPR027417 -
Amo02g0125 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Amo02g0125 852 Gene3D Tetratricopeptide repeat domain 264 342 IPR011990 GO:0005515
Amo02g0125 852 PANTHER OS07G0259400 PROTEIN 10 580 - -
Amo02g0125 852 Pfam E motif 496 558 IPR046848 -
Amo02g0125 852 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0125 Amo-Chr2 1411630 1419132 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0125 27 592 Glycoside Hydrolase AT3G49170 31.926 8.12e-98 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0125 - - gmx:100778378 877.856