Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4062 ATGTGGAAGTGGAAGAATGTCCTTCAACACAGTTACACGTTCACGCGCTCACACACGCGCTCTTACTCCGCCATTCAGCGKTTCAGCTCAACTTCAACTGCAACTACTRCGATTGAATTCCGYTGGCGCTTCCTCCTCACTCGTTCTTCGTTTTCCTATTCAAGTCAACCACYYCCAGAAAACGGCGCCGTYTCAGCTGCTAAGGATGATGATAAGTTCGAGCCAGTTACTGGATGGAACAAGCAACTCGTCAAGCTTAAGATTCTACTCGCCTTTCCCTGGGAGCGTGTCCAATACGGCTCCCTCTACTCCGTCAAGCTGCGCGGCCGGATAACGGAACAGCTGCAGAGTAGGTACTCTCGAGCACTGTCTCTGCCTCAGATTTGTGAAAATTTCTTCAAAGCAGCTTATGATCCTCGGATCGCCGGCATCTACCTCCGTATTGATCCTCTGAGCTGCGGCTGGGCTAAACTCGATGAAATTCGACGTCACATATTTGATTTCAGAAAATCAGGAAAATTTGTTGTGGCGTTTGTCCCTTCATGTCGAGAAAAGGAGTATTACCTTGCGTCTGCATGTGAAGAGATATATGCTCCTCCAAGTGCCTATGTTTCTTTGTATGGATTGGCCATTCAAGCACCTTTCTTCAGAGGTATTTTAGATAACCTAGGAATTGAGCCTCATTTGGAAAGGATTGGCAAATACAAATCAGGAGATAACCTTACTCATAGATCAATGACTGAAGAGAGTTCTGAGGTGCTGAACCAATTGCTTGACAATATCTATACAAATTGGCTGGATAAAGTGTCTTCTGCTAAAGGGAAGAAAAYAGAAGATATTGAGAACTTCATAAATGAAGGTGTGTATGATGTGGACAGACTGAAGGAAAAGGGCTACATATCAGACGTAATCTATGAGGATGAGATTATGGCCAAGTTAAGGAAGAGACTAGGAGTGAAAATTAATAAAAATCTACCTATGGTTGATTACAGAAAATACTCTTTAGTCAGGAAATGGACTCTTGGAGTATCTGGTGGTAAAGATTTGATAGCCATAATCAGAGCCACAGGGCTCATCCGCWGTGGTGATAGTTCATCAGGTGTTCGTTCCTCAGGTGTCATTGCAGAGAAGATCATTGAGAAGATTCGCAAAGTCAGAGAATCAAAACAATTTAAGGCTGTGATTATCCGAATTGATAGTCCGGGAGGTGATGCTCTTGCTTCTGATATGATGTGGAGAGAAATCAGGCTTCTGGCAGCCTCAAAACCAGTCATTGCTTCAATGTCTGATATTGCAGCAAGTGGAGGGTACTACACGGCAATGGGAGCAAGGGCAATTGTTGCTGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTTACAGCAAAATTTAACCTGGGGAAATTGTATGAGATGATTGGCTTCAACAAAGAAATCATATCAAGGGGAAGATACGCTGAACTCCTTGCTGCTGAGCAGCGTTCTTTTCGGCCACATGAAGCAGAGTTATTTGCAAAGTCTGCACAACGCATTTATAAACAGTTTCGTGACAAGGCAGCTCTTTCGCGATCAATGACAGTAGAAAAGATGGAAGAGGTTGCGCAGGGGAGGATTTGGATGGGCAAGGATGCAGCTTCACATGGTTTAGTTGATGCTGTCMGTGGCCTTTCTCAAGCCATTTCCATAGCTAAATCAATGGCCAATATACCTAACGACAGACAGGTTACTGTTGTGGAGCTCTCAAGACCCACCCCTTCTCTACCCGAGATTTTGAGAAGTCTAGGTGGTTCTATCGTTGAGGTAGACACAACGTTAAAGGAATTGTCACAGGACTCGACATTTTCTAATGGAGTTCAAGCGCGGATGGATGGAATCATTGAATCATGTTTCAGAAATTCGGACATCTAA 1908 0.4387 MWKWKNVLQHSYTFTRSHTRSYSAIQRFSSTSTATTXIEFRWRFLLTRSSFSYSSQPXPENGAVSAAKDDDKFEPVTGWNKQLVKLKILLAFPWERVQYGSLYSVKLRGRITEQLQSRYSRALSLPQICENFFKAAYDPRIAGIYLRIDPLSCGWAKLDEIRRHIFDFRKSGKFVVAFVPSCREKEYYLASACEEIYAPPSAYVSLYGLAIQAPFFRGILDNLGIEPHLERIGKYKSGDNLTHRSMTEESSEVLNQLLDNIYTNWLDKVSSAKGKKXEDIENFINEGVYDVDRLKEKGYISDVIYEDEIMAKLRKRLGVKINKNLPMVDYRKYSLVRKWTLGVSGGKDLIAIIRATGLIRXGDSSSGVRSSGVIAEKIIEKIRKVRESKQFKAVIIRIDSPGGDALASDMMWREIRLLAASKPVIASMSDIAASGGYYTAMGARAIVAESLTLTGSIGVVTAKFNLGKLYEMIGFNKEIISRGRYAELLAAEQRSFRPHEAELFAKSAQRIYKQFRDKAALSRSMTVEKMEEVAQGRIWMGKDAASHGLVDAVXGLSQAISIAKSMANIPNDRQVTVVELSRPTPSLPEILRSLGGSIVEVDTTLKELSQDSTFSNGVQARMDGIIESCFRNSDI* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4062 635 SUPERFAMILY ClpP/crotonase 97 308 IPR029045 -
Amo01g4062 635 Gene3D - 493 620 - -
Amo01g4062 635 Gene3D - 345 492 - -
Amo01g4062 635 PANTHER PROTEASE 4 40 623 - -
Amo01g4062 635 CDD S49_SppA_67K_type 105 315 - -
Amo01g4062 635 PIRSF Protease_4_SppA 31 633 IPR004634 GO:0006465|GO:0008233|GO:0016021
Amo01g4062 635 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 350 566 IPR004635 GO:0006508|GO:0008233
Amo01g4062 635 Gene3D - 102 335 - -
Amo01g4062 635 CDD S49_Sppa_N_C 350 564 IPR002142 GO:0006508|GO:0008233
Amo01g4062 635 SUPERFAMILY ClpP/crotonase 346 555 IPR029045 -
Amo01g4062 635 Pfam Peptidase family S49 168 319 IPR002142 GO:0006508|GO:0008233
Amo01g4062 635 Pfam Peptidase family S49 418 568 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4062 Amo-Chr1 114978574 114988837 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4062 K04773 - gmx:100809623 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4062 01 114978574 114988837 Amo11g2435 11 129283590 129294567 hybridization