Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4052 ATGCCTACCATCAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACCTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGCTTTGGGATCGAGCTGGATGACGTCACGACGGAGAAGGCGATTGTGAGGAAAGAGAGGCATTTGGAAGCAGAAGAAGATGCTGACGAGGATGAAGAAGTCATCTACAAAATTGAAGTTCCCGCCAATAGATATGATTTGTTGTGCCTTGAAGGGCTTGCACAGGCCCTTCGAGTATTCTGTGAGTGTCAGCAGATCCCCACTTACAAATTGGCAGATGTTAGTAAAGATGCAATGCTCAAAATGCATGTTAAGCCTGAGACATCTCAGATTCGTCCATACATTGTGTGTGCCGTGTTAAGAGGTATTACTTTTGATAAAGCAAGATACAACAGCTTTATCGATCTCCAAGACAAGCTTCACCAAAACATTTGTAGGAGAAGAACCCTTGTTGCTATTGGCACTCATGATCTGGATACATTGAAAGGACCTTTCACCTATGAGGCTTTACCACCGTCAAGTGTAAATTTTACCCCGCTGAAGCAGGAAAGGAGCTTCAGGGCTGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAGCTGAAGAAATTCTTGCATATAATTGAGGACTCCCCTGTTTTTCCTGTTATATATGACCGTAACAGAACTGTTTTATCTTTGCCTCCAATTATCAACGGTGCACATTCGGCCATCACTCTGGAGACAAAGAATGTATTTATTGAATGTACTGCTACTGACTTAACAAAGGCAAAGATTGTTTTAAACACAATGGTCACAACCTTCTCGGAATATTGTGCAAATAAGTTTGTCATTGAACCAGTAGAAGTGGTTTATCCTGATGGAAAGTCACATATATACCCCGACTTATCCATCTATAATATGGAGGTTTCTCTACCTTACGTCAATGGATTAATTGGGGTATCCTTGGAAGCAGAAGAGGTCACTAAGCTCTTAAATAGGATGCAATTGCATGCCAAACAGTCTACATCTGATAATAAGCAGGCTAAATTTGTTGTATCTGTACCCCCTACTAGAAGTGATATTCTTCACCCGTGTGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAGTGCTATCAAGGATAAAGCAATAGTAGATAATAAGGGCTCAAAGAGATTGGCTGCTTCATTGAAGCTACTTCCTCTGAATGAGCTTAGTGATCTGATCAGAAAAGAGGTGGCAATGGTTGGGTTCACAGAGGTCTTGACATTTATACTTTGCTCGAAAAAGGAAAACTTTGCCATGCTAAACCGCAAAGATGATACATCAAAAGCAGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTACGGACCAGTCTTATGCCTGGCATCTTGAAAACTGTGGCTCATAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTAGGGGATATATCAGTTTTAGATGACAACAATGACGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCACTATACTGCGGTGCTAATGCAGGATTTGAGGTTGTTCATGGTTTGGTGGACAGAGTAATGGAAAAGAATGGGGTTCCCTTTGTTTCATCCGGTGATAAATCAGGTTACTATATTGAGCGATCAGATGAGCCTGAGTTTCTTGCGGGTAGACAAGCTAGAATCATTTACAAGGGAAAGCACATTGGCACTTTTGGCATTGTCCACCCAGAGGTATTGAACAATTTTGACATTCCTGATCCCTGCTCCTTTGTTGAACTTAACATTGAAAGCCTATTATAA 1815 0.4171 MPTISVGRDRLFAALGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKERHLEAEEDADEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCECQQIPTYKLADVSKDAMLKMHVKPETSQIRPYIVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLKGPFTYEALPPSSVNFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVFPVIYDRNRTVLSLPPIINGAHSAITLETKNVFIECTATDLTKAKIVLNTMVTTFSEYCANKFVIEPVEVVYPDGKSHIYPDLSIYNMEVSLPYVNGLIGVSLEAEEVTKLLNRMQLHAKQSTSDNKQAKFVVSVPPTRSDILHPCDVMEDVAIAYGFSAIKDKAIVDNKGSKRLAASLKLLPLNELSDLIRKEVAMVGFTEVLTFILCSKKENFAMLNRKDDTSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDISVLDDNNDVGAKNLRQLAALYCGANAGFEVVHGLVDRVMEKNGVPFVSSGDKSGYYIERSDEPEFLAGRQARIIYKGKHIGTFGIVHPEVLNNFDIPDPCSFVELNIESLL* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4052 604 SUPERFAMILY Putative DNA-binding domain 309 384 IPR009061 -
Amo01g4052 604 SUPERFAMILY PheT/TilS domain 221 281 - -
Amo01g4052 604 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 405 600 IPR041616 -
Amo01g4052 604 SMART B3_4_2 120 282 IPR005146 GO:0003723|GO:0004826
Amo01g4052 604 SUPERFAMILY Class II aaRS and biotin synthetases 377 603 IPR045864 -
Amo01g4052 604 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 603 - -
Amo01g4052 604 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 603 IPR045060 GO:0004826|GO:0006432
Amo01g4052 604 Pfam tRNA synthetase B5 domain 310 380 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Amo01g4052 604 Gene3D - 102 306 IPR020825 -
Amo01g4052 604 Gene3D Bira Bifunctional Protein; Domain 2 404 604 IPR045864 -
Amo01g4052 604 SUPERFAMILY Putative DNA-binding domain 4 96 IPR009061 -
Amo01g4052 604 Gene3D - 1 90 - -
Amo01g4052 604 SMART B5_2 307 380 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Amo01g4052 604 CDD PheRS_beta_core 405 603 IPR041616 -
Amo01g4052 604 Pfam B3/4 domain 121 281 IPR005146 GO:0003723|GO:0004826
Amo01g4052 604 Gene3D - 308 383 - -
Amo01g4052 604 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 604 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Amo01g4052 604 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 90 IPR040659 -
Amo01g4052 604 ProSiteProfiles B5 domain profile. 305 385 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4052 Amo-Chr1 114823062 114830697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4052 K01890 - gmx:100805249 1100.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4052 01 114823062 114830697 Amo11g2459 11 130049219 130056827 hybridization