Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4048 ATGAGGTTCCAAATAAGCAACACCGTAGTGGGTGCTCTCAACATTCTATCTCTCCTGCTTGGTCTCTCTGCCCTTGCAACCTCCGCTTACATTCACTTTCACGGAGGTGATGGTGCCTCTGATTGCCAGAAGGTTCTCCAGTATCCTCTCCTCATTGCTGGAGTTTTCATTATCATCATCTCTACGCTTGGCATAGTAGGCTCCCTATGCCGCATCAACTTCGCATTGTATGCCTATCTGCTCATCACCTTCCTTCTTATTGTGGCTATGATTCTCTTTACCATTTTTGCCCTCTTTGTAACAAACAAGAAGGTTGGCCAGCAAGTCTCTACCAGAGCCTATGGCGAGTACGTGGTCACTGATTTCTCTCACTGGCTTCAGCATTACGTTGTCAACAACAAAAATTGGGATGAAGTTAAGAGTTGCTTGATGGATGCTGGTGTTTGCCATGATCTTGCTATCCACGGTGGCTTCAACCATAGCAATGAAGATCTCTTTTTCAAGCACTTGTCCACCACGCAGGTAGGGTGTTGTAAGCCACCTGCGAATTGTGGATTCAAGATGAAGAATGCTACATACTGGGAAGCTCCAAAGACAGGAGCAAGTTGGGCAAATAATTCAGATTGCAAGATTTGGAGTAACAAAGAGGACAAACTTTGTTATGATTGCAATTCATGCAAAGGTGGGGTGTTGGCCAATATAAGGAACCAGTGGAAGCATCTCACCATATTCAACTCTGTTGTGTGTGTGCTTGTAACCGCCATTTATGTTTTGGGATGCTTTGCCATAAGGAACAACCGCATCGACATGTACAACAAGAACCACACACACCCTTGA 837 0.4504 MRFQISNTVVGALNILSLLLGLSALATSAYIHFHGGDGASDCQKVLQYPLLIAGVFIIIISTLGIVGSLCRINFALYAYLLITFLLIVAMILFTIFALFVTNKKVGQQVSTRAYGEYVVTDFSHWLQHYVVNNKNWDEVKSCLMDAGVCHDLAIHGGFNHSNEDLFFKHLSTTQVGCCKPPANCGFKMKNATYWEAPKTGASWANNSDCKIWSNKEDKLCYDCNSCKGGVLANIRNQWKHLTIFNSVVCVLVTAIYVLGCFAIRNNRIDMYNKNHTHP* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4048 278 PANTHER TETRASPANIN-8-RELATED 3 270 IPR044991 GO:0009734|GO:0016021
Amo01g4048 278 Pfam Tetraspanin family 7 259 IPR018499 GO:0016021
Amo01g4048 278 ProSitePatterns Transmembrane 4 family signature. 54 76 IPR018503 GO:0016021
Amo01g4048 278 PANTHER TETRASPANIN-8 3 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4048 Amo-Chr1 114782430 114783401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g4048 3 267 Miscellaneous Gene Families AT1G18520 44.361 2.50e-80 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4048 - - adu:107471116 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4048 01 114782430 114783401 Amo11g2469 11 130172389 130173372 hybridization