Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g4038 ATGGATTCGGATGAAGAAGATTTTGTGTTCTACGGAACGCCCATAGAGCGTGAAGAAGAGTTAACTAGCCGCAAAAAGAAGGCCATTGCTGAGTCCTCTGGTCAACTTCGAACACTTCCAGCTTGGAAGCAAGAGGTTAGAGATGAGGAAGGACGGAGAAGATTCCATGGTGCATTTACTGGAGGCTATTCGGCTGGTTACTATAATACAGTGGGCTCAAAGGAGGGGTGGACTCCTCAGACTTTCAGATCCTCCAGGAAGAACAGAGCTGAGTTCAAAGAGCAGAACATATTAAATTTTCTAGATGAAGATGAGAAAGCTGAATTGGATGGTCGGTTTTTGGGGACATCTTCACAGTTTGACACATTTGGTTTTACTGCTGCTGAAATTGCTCGGAAACAAGCTGAGAAAGAGCAGAAGCAGAGGCCATCTGTTATTCCTGGACCTGCTCCTGATGAACTAATTCAACCAGCTACAGAGTCTATTGGGGTAAAACTACTATTGAAGATGGGATGGAGGCGTGGTCGCTCAATTAAGGATTCCCATGCTGATGCACTCTATGATGCCAGAAGACAGGCCAGGAGAGCTTTCTTAGCATTTTCCTCAGATGATCCAAAAGTCAAAACTAGTGAGTCTGAGCAGAACAAGGATGATGTTGAAACTTTTCTTGAGCAGTCTACTAATGACGATGTTCAGTCTTCTAAGAGCACACCAGTTTTTGTGCTCAACCCAAAGCAAGACCTGTATGGCTTAGGTTTTGATCCTTATAAACATGCTCCTGAGTTTAGAGAGAAAAAACGATCACGCTTATCCAGCAAGGGGGGTCCTGGGTATAGCAAAAACATGTCCACAAGGAACAGTCTTTTCAGTCTAAAGTCAGGAAAGTCAGCCCCTGGTTTTGGAATAGGAGCACTTGAGGAACTCGATGCTGAGGATGAGGATGTCTATGCCACTGGTTTTGAATTTGAAGATACATATGTTCAAGAAGTTGAAGAACCTTCAACGTTGAGGTTGGAAAATCAGAAAAAGAAGGATCAGAAGGATCAGAAGGACCATGATAATCTACCTGGTTTTAGAGTTGCATCCAATACTGACTATCAAATGGAAAGATTTGAGGCTCCTCCAATTCCCAAGGATTTTGTGCCTCGCCATTCATTTTCCGGGCCTCTTGAGATTAATCACAAGAACTATGATCTACCTCCTCCAGATATTCCACCTCCTGAGGATAGCAACCTAAAAATATTGATTGAGGGGGTTGCAAATCTGGTTGCTAGATGTGGTAAATTATATGAGGATATATCTAGAGAAAAGAATCAGTCAAATCCGTTGTTTAGTTTTCTCTCTGGTGGTACTGGCCATGATTATTATGCAAGGAAACTGTGGGAGGCACAACAAAAATGCAAAGACAAAACTAAGCCACTTTTGGATGGGAAGGTTTCTTCTGATGTAAAGAGGCTGACAGCTGAGAGCCGAGGCCAGATCTTAGGGGAAAAACCTCTAGAAAGAAGCTTGCAAGATTCATCATCTTCTGTTGCTTCCACAGATGTTCATCTCCAGTTTAATCTTACGGATACATTTACAAAGTCTGAACCATTTGGTGAGTTACCAGATGTTGAAAAGCCTTTCAAGCATGATCCTGCAAAACAAGAAAGATTTGAGCAGTTTCTCAAAGACAAATATAGAGGGGGTTTACGATCTACTAAATCAAGCCTAGCTGGTGATATGTCAGAGGCTGCTCGTGCTCGAGAGAGACTAGATTTTGAGGCTGCAGCTGAGGCAATATTAAAAGGAAAGCAGGGAAAGGAAAGCAATCTTGGCATTCCATCTTCCATGGATTTCATCACAGGTGGTCTTATGCAGTTTACTTCTGGAGAAGCAGAGCCAAAGAAAGATCTGCAAAGTGAAGATTTGGCGCAGAAGAAGAAGTACCCTAGAAGGGAAGAATTTCAATGGCGCCCTTCAGCACTTCTCTGCAAGCGTTTTGATCTCATTGATCCGTACATGGGGAAGCCGGCACCTGCTCCGCGGAGTAGGAGCAAGTTGGATTCATTGATTTTCACATCAGACTCAGCCAAAGGCGCCAAAATAGAAGAGCCTGTTCTTTCTAAGAACATATCGTATGTGCAACAATCAGCTAATCAAGACATAACTAAAAGTACTGCTGAAAGTGAAACTGAAGGGGATGTGGAAGTTGAAAACATTGAAAGGCCAGTTGATCTGTACAAGGCTATTTTCTCTGATGATTCAGATGATGGAGGTGAAGACCCTAATAATCTTGAGAAAGTGGAGAATCAAGAAAAGAAAGCTGAAGTAGCCAATACAGCATTGAGCCGTTTGATTGCTGGTGACTTTCTAGAATCATTGGGTAAAGAACTAGGGCTTGAGGTTCCTCCTGATATGCCTTACCCCTCACAAAAATTCAGGAATACTGCTTCTCAGGAAGAAAATATCAACGAACATTCAAGAACAAACACTCTAAATGTTGAACACAACAGTGAGATGCCACCAAATCATGGTTTGCCATCTGATCAGGACACTGTATATGAGGGTGGACCCTCAAAAGGTGACGTCATTCATGCAAATATGCTTGAGAGTGGTAGCACAAAAATCAATGCTACTGGAATCTATGACAGTAAATCCGGTAAGTCCAATGGGGAGAGCTATAAAGATGACATGAAAATCAAATCGCCTTTACCCCGGGAACAAGATCATAGCAGTGGTTCATCATCAGAAGAGGAAAGGAAGAGAAAACGCTCAGGTAAGTCTAGCAGGGATAAACATGAAGAGTACAGGAAAACTAAAACTCTTTCAACACACCGCCGAGACTATAGCAGTGGTTCTTCATCTGAAGAGGAAAGCAGTAGAAAACGTTCCAGGCATCATCGACATAGGAGGCGTACAGAAAGCGATCCATCCAGTGAAAGGGATCGACATGGTTCAAGGTCAAAAGAGAGAAAGAAAGGGTCTTCTCGAGAGAAAAGCAGTCGGAGTAGAAAACACTCAAAACATCACAAGCACAGAAGACATTAA 3030 0.4274 MDSDEEDFVFYGTPIEREEELTSRKKKAIAESSGQLRTLPAWKQEVRDEEGRRRFHGAFTGGYSAGYYNTVGSKEGWTPQTFRSSRKNRAEFKEQNILNFLDEDEKAELDGRFLGTSSQFDTFGFTAAEIARKQAEKEQKQRPSVIPGPAPDELIQPATESIGVKLLLKMGWRRGRSIKDSHADALYDARRQARRAFLAFSSDDPKVKTSESEQNKDDVETFLEQSTNDDVQSSKSTPVFVLNPKQDLYGLGFDPYKHAPEFREKKRSRLSSKGGPGYSKNMSTRNSLFSLKSGKSAPGFGIGALEELDAEDEDVYATGFEFEDTYVQEVEEPSTLRLENQKKKDQKDQKDHDNLPGFRVASNTDYQMERFEAPPIPKDFVPRHSFSGPLEINHKNYDLPPPDIPPPEDSNLKILIEGVANLVARCGKLYEDISREKNQSNPLFSFLSGGTGHDYYARKLWEAQQKCKDKTKPLLDGKVSSDVKRLTAESRGQILGEKPLERSLQDSSSSVASTDVHLQFNLTDTFTKSEPFGELPDVEKPFKHDPAKQERFEQFLKDKYRGGLRSTKSSLAGDMSEAARARERLDFEAAAEAILKGKQGKESNLGIPSSMDFITGGLMQFTSGEAEPKKDLQSEDLAQKKKYPRREEFQWRPSALLCKRFDLIDPYMGKPAPAPRSRSKLDSLIFTSDSAKGAKIEEPVLSKNISYVQQSANQDITKSTAESETEGDVEVENIERPVDLYKAIFSDDSDDGGEDPNNLEKVENQEKKAEVANTALSRLIAGDFLESLGKELGLEVPPDMPYPSQKFRNTASQEENINEHSRTNTLNVEHNSEMPPNHGLPSDQDTVYEGGPSKGDVIHANMLESGSTKINATGIYDSKSGKSNGESYKDDMKIKSPLPREQDHSSGSSSEEERKRKRSGKSSRDKHEEYRKTKTLSTHRRDYSSGSSSEEESSRKRSRHHRHRRRTESDPSSERDRHGSRSKERKKGSSREKSSRSRKHSKHHKHRRH* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g4038 1009 Pfam Surp module 415 462 IPR000061 GO:0003723|GO:0006396
Amo01g4038 1009 ProSiteProfiles G-patch domain profile. 159 178 IPR000467 GO:0003676
Amo01g4038 1009 Gene3D Surp module 339 469 IPR035967 GO:0003723|GO:0006396
Amo01g4038 1009 MobiDBLite consensus disorder prediction 967 991 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 330 358 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 262 283 - -
Amo01g4038 1009 SMART surpneu2 413 465 IPR000061 GO:0003723|GO:0006396
Amo01g4038 1009 MobiDBLite consensus disorder prediction 992 1009 - -
Amo01g4038 1009 SUPERFAMILY Surp module (SWAP domain) 390 464 IPR035967 GO:0003723|GO:0006396
Amo01g4038 1009 MobiDBLite consensus disorder prediction 883 956 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 809 1009 - -
Amo01g4038 1009 Coils Coil 759 779 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 809 832 - -
Amo01g4038 1009 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 934 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 745 765 - -
Amo01g4038 1009 ProSiteProfiles SURP motif repeat profile. 415 459 IPR000061 GO:0003723|GO:0006396
Amo01g4038 1009 MobiDBLite consensus disorder prediction 335 355 - -
Amo01g4038 1009 PANTHER BNACNNG56020D PROTEIN 1 934 - -
Amo01g4038 1009 MobiDBLite consensus disorder prediction 864 882 - -
Amo01g4038 1009 Pfam Protein of unknown function (DUF1604) 39 112 IPR011666 GO:0006397
Amo01g4038 1009 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g4038 Amo-Chr1 114602914 114610342 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g4038 K13123 - gmx:100796934 1334.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g4038 01 114602914 114610342 Amo11g2478 11 130459873 130461361 hybridization