Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3343 ATGGCTACTTCTGTGGGTCACCAATTCCCACTCTCTTCTTCGCGCTTCTCCAAACCATCATTCTCTTTCACTCAGAAGCGAAGCTCCCTCACCATCGTCAACTCAGTGGCACTATCCAATGCGCAGAGCAAGGAGAGGCTGAAGCTGAAGGAACTCTTCAATGAAGCCTATGACAGGTGCCGCAATGCTCCCATGGAAGGCGTTTCCTTCACCCTCGAAGACTTCACCGCCGCTCTCGACAAGTATGACTTCGATGCCGAAGTTGGCACCAAAGTCAAAGGCACTGTGTTTGCCACAGATGCTAATGGAGCACTCGTTGATATCACAGCGAAATCTTCTGCATACTTGCCACTACAAGAGGCTTCCATACACAAGATCAAGAATGTGGAAGAAGCGGGGATTGTGGTTGGATTGAGAGACGAGTTTTTGATAATTGGTGAGAATGAAGCTGACGATAGTTTGATCTTGAGCTTGAGGTCTATGCAGCATGATCTTGCTTGGGAACGATGCAGACAACTCCAAGCTGAAGATGTTATTGTCAAGGGTAAGATTGTTGGTGCAAACAAAGGTGGAGTGGTGGCTGAGGTGGAAGGCCTTAGAGGCTTCGTTCCATTCTCACAGATATCAACTAAATCAAGTGGAGAGGAGCTTGTGGATAAGGATATTCCTCTCAAGTTTGTGGAGGTGGATGAGGAACAACAAAGACTTGTTCTAAGTAACCGAAAGGCCATGGCGGATACCCAATCACAGCTTGGAATTGGATCTGTAGTGACAGGATCTGTTCAAAGCCTAAAGCCATACGGCGCCTTCGTCGACATTGGTGGAATCAATGGCCTCCTTCATGTGAGTCAGATTAGCCATGACAGAGTAGTTGATATCTCAACTGTTCTTCAACCTGGTGATACTCTCAAGGTGATGATCTTGAGTCATGATAGGGAGAGAGGAAGAGTAAGTCTTTCCACCAAGAAGCTGGAACCTACACCTGGTGATATGATCCGTAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCTCAAGCCGAAGCTATGGCTCGTGCTGACATGCTTAGGTTCCAGCCTGAGGGTGGATTAACTCTTGGGAGTGATGGGATATTGGGACCAATTACTTCAGACTTGCCTGAGGAGGGACTGGATTTGAGTGAGGTGCCTCTTGCTGAAGAATCATGA 1215 0.4741 MATSVGHQFPLSSSRFSKPSFSFTQKRSSLTIVNSVALSNAQSKERLKLKELFNEAYDRCRNAPMEGVSFTLEDFTAALDKYDFDAEVGTKVKGTVFATDANGALVDITAKSSAYLPLQEASIHKIKNVEEAGIVVGLRDEFLIIGENEADDSLILSLRSMQHDLAWERCRQLQAEDVIVKGKIVGANKGGVVAEVEGLRGFVPFSQISTKSSGEELVDKDIPLKFVEVDEEQQRLVLSNRKAMADTQSQLGIGSVVTGSVQSLKPYGAFVDIGGINGLLHVSQISHDRVVDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPEGGLTLGSDGILGPITSDLPEEGLDLSEVPLAEES* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3343 404 Pfam S1 RNA binding domain 175 239 IPR003029 GO:0003676
Amo01g3343 404 Pfam S1 RNA binding domain 253 322 IPR003029 GO:0003676
Amo01g3343 404 CDD S1_RPS1_repeat_hs4 254 322 - -
Amo01g3343 404 ProSiteProfiles S1 domain profile. 177 241 IPR003029 GO:0003676
Amo01g3343 404 Coils Coil 339 359 - -
Amo01g3343 404 CDD S1_RPS1_repeat_ec2_hs2 177 241 - -
Amo01g3343 404 ProSiteProfiles S1 domain profile. 254 322 IPR003029 GO:0003676
Amo01g3343 404 PANTHER 30S RIBOSOMAL PROTEIN S1, CHLOROPLASTIC 24 404 - -
Amo01g3343 404 PANTHER 30S RIBOSOMAL PROTEIN S1 24 404 - -
Amo01g3343 404 Gene3D - 72 169 IPR012340 -
Amo01g3343 404 SUPERFAMILY Nucleic acid-binding proteins 253 332 IPR012340 -
Amo01g3343 404 CDD S1_RPS1_repeat_ec1_hs1 89 159 - -
Amo01g3343 404 Gene3D - 170 248 IPR012340 -
Amo01g3343 404 ProSiteProfiles S1 domain profile. 89 159 IPR003029 GO:0003676
Amo01g3343 404 Gene3D - 249 326 IPR012340 -
Amo01g3343 404 SMART S1_6 87 159 IPR022967 -
Amo01g3343 404 SMART S1_6 252 322 IPR022967 -
Amo01g3343 404 SMART S1_6 175 241 IPR022967 -
Amo01g3343 404 PRINTS Ribosomal protein S1 signature 89 107 IPR035104 -
Amo01g3343 404 PRINTS Ribosomal protein S1 signature 107 121 IPR035104 -
Amo01g3343 404 PRINTS Ribosomal protein S1 signature 180 196 IPR035104 -
Amo01g3343 404 PRINTS Ribosomal protein S1 signature 225 245 IPR035104 -
Amo01g3343 404 SUPERFAMILY Nucleic acid-binding proteins 84 184 IPR012340 -
Amo01g3343 404 SUPERFAMILY Nucleic acid-binding proteins 172 245 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3343 Amo-Chr1 105870017 105872198 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3343 K02945 - nnu:104607070 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3343 01 105870017 105872198 Amo14g1251 14 19997019 20000240 PCT
Amo14g1251 14 19997019 20000240 Amo01g3343 01 105870017 105872198 PCT