Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2718 ATGAGTTTCATCTTTGGAAAAAGAAAAACCCCCGCAGAATTGCTGCGGGAAAATAAGAGAATGTTGGACAAATCAATTAGAGAAATAGAGCGAGAGAGACAAGGATTACAATCACAGGAGAAGAAATTGATTTTAGAGATAAAGAAAAGTGCAAAACAAGGCCAGATGGGTGCTGTTAGAGTGATGGCAAAAGATCTTGTTAGAACAAGGCATCAAATTGAAAAGTTTTATAAGCTTAAATCACAACTTCAGGGCGTATCACTCAGGATTCAAACTTTGAAGTCAACACAAGCCATGGGTGAGGCAATGAAAGGTGTGACCAAGGCAATGGGACAGATGAATAGGCAGATGAACTTGCCTTCTTTGCAGAAAATCATGCAAGAATTTGAGAGACAGAACGAGAAGATGGAATTGGTAACTGAGGTGATGGGAGATGCAATAGATGATGCTATGGAAGGGGATGAGGAAGAAGAAGAAACTGAAGAACTAGTGAACCAGGTTCTTGATGAGATCGGAATTGACATGAACCAAGAGCTTGTGAATGCTCCCTCGTCGTCTGTTGCAGCGCCAGCTGCAAAGACTAAGGTGCCTCAAGTTGAAACTGCTGCGAATGATGATGCCGGGATAGATAGTGATTTACAGGCAAGATTAGACAATTTAAGAAAGATGTAA 672 0.4107 MSFIFGKRKTPAELLRENKRMLDKSIREIERERQGLQSQEKKLILEIKKSAKQGQMGAVRVMAKDLVRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVTEVMGDAIDDAMEGDEEEEETEELVNQVLDEIGIDMNQELVNAPSSSVAAPAAKTKVPQVETAANDDAGIDSDLQARLDNLRKM* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2718 223 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 1-LIKE 1 223 - -
Amo01g2718 223 Pfam Snf7 17 185 IPR005024 GO:0007034
Amo01g2718 223 Coils Coil 220 223 - -
Amo01g2718 223 PANTHER CHARGED MULTIVESICULAR BODY PROTEIN 1 223 IPR005024 GO:0007034
Amo01g2718 223 Coils Coil 12 46 - -
Amo01g2718 223 Coils Coil 119 139 - -
Amo01g2718 223 Gene3D - 6 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2718 Amo-Chr1 97973003 97974774 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2718 K12191 - mnt:21409971 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2718 01 97973003 97974774 Amo13g2695 13 54835153 54840353 PCT
Amo13g2695 13 54835153 54840353 Amo01g2718 01 97973003 97974774 PCT