Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2103 ATGGCGCTGTTCCTTCTCTACGAGTCTGCTTCGGGCTACGCCCTTTTCGAGGCTCACGGCCTCGACGAAATCGGTCAGAACACCGAAGCCGTTCGGAGCTCCGTTTCCGATCTCAACCGCTTCGGTAAGGTCGTCAAGCTCCGCTCCTTTAACCCTTTCACCTCCGCCCTCGATGCCCTCAAACAGTGCAACGCCGTCTCCGAAGGCATATTGACCGATGAGCTGAGAACTGTCTTGGAGACTAACTTGCCTAAAGTGAAGGAAGGGAAGAAGGCCAAGTTCAGTTTGGGTGTTTCGGACCCTAAGATTGGTTCTCAGATATCTGAAGTCACCAAAATTCCCTGTCAAAGTAATGATTTTGTGAATGAGCTGCTCCGTGGAGTGAGGCTCCATTTCAATAAGTTTGTTGGTGACCTCAAGCCTGGAGATTTGGAGAAGGCACAACTTGGTCTGGGGCATAGCTACAGCAGAGCCAAGGTGAAGTTCAATGTTAATCGGGTTGACAATATGGTCATCCAAGCAATCTTCCTTCTCGATACACTTGATAAGGACATCAATTCATTCTCCATGAGGGTCAGAGAATGGTATTCATGGCATTTTCCTGAACTGGTGAAGATTGTGAATGACAATTATCTTTATGCGAAAGTTGCAAAATATATTGAGGATAAAGCAAAGTTGTCCGAAGACAATATTCCGGCTCTAACTGACATAGTTGGAGATGAAGATAAGGCAAAGGAGATTGTTGAAGCTGCCAAGGCCTCCATGGGACAGGATTTATCCCCAGTGGACTTGATTAATGTCCATCAATTTGCACAGAGGGTAATGGACCTATCTGAGTATAGGCGGAAGTTGTATGATTACCTGGTTTCTAAAATGAATGACATTGCCCCAAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGTGCACGATTAATATCTCATGCTGGTAGCCTCACAAATTTAGCGAAGTGCCCATCTTCAACCCTTCAAATTCTTGGTGCAGAGAAAGCTTTGTTCAGGGCACTAAAAACTAGAGGAAATACTCCCAAATATGGTCTGATATTCCACTCTTCATTTATTGGTCGAGCATCTGCTAGAAATAAGGGTCGAATGGCTCGCTATCTTGCAAACAAATGTTCAATTGCATCACGGATTGACTGCTTTTCTGAAAGGGGTACAACCGCTTTTGGGGAGAAACTTCGTGAACAAGTTGAGGAGCGACTTGACTTCTACGACAAGGGAGTTGCCCCTCGTAAAAACATAGACGTCATGAAGTCTGCCCTTGAAAGTGTAGTGAACAAAGATACAGAAACGGATACACAAGAAGTGCCAGTTGAAGCATCAGCAAAGAAAGACAAGAAGAAGAAGAAGCAAAAAGCTGCTAATGTAGATGAAGCTGACGAAATGGCTGTAGTGGATAAAGCCCCAGAAACTACAAATGGTGATGCAGTGGAGGATCATAAATCAGAAAAGAAGAAAAAGAAAGAAAAGAGGAAATTGGAACAGGAGATGGAGCTTGACCAGGCCGTAGGTGATAGTGCTGCCGGTGATCAAGATGGAACAGCTAAAAAGAAGAAGAAGAAGACAAAGGATAAGAGAGACGATGATGATGGAGAAGTACCAGAGGCTGTTACTGAGACTAAGAAGAAGAAAAAGAAATCAAAAAGTAAGGATGCCGAATAA 1683 0.4421 MALFLLYESASGYALFEAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLRSFNPFTSALDALKQCNAVSEGILTDELRTVLETNLPKVKEGKKAKFSLGVSDPKIGSQISEVTKIPCQSNDFVNELLRGVRLHFNKFVGDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYAKVAKYIEDKAKLSEDNIPALTDIVGDEDKAKEIVEAAKASMGQDLSPVDLINVHQFAQRVMDLSEYRRKLYDYLVSKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFSERGTTAFGEKLREQVEERLDFYDKGVAPRKNIDVMKSALESVVNKDTETDTQEVPVEASAKKDKKKKKQKAANVDEADEMAVVDKAPETTNGDAVEDHKSEKKKKKEKRKLEQEMELDQAVGDSAAGDQDGTAKKKKKKTKDKRDDDDGEVPEAVTETKKKKKKSKSKDAE* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2103 560 MobiDBLite consensus disorder prediction 432 560 - -
Amo01g2103 560 Gene3D - 141 298 - -
Amo01g2103 560 Gene3D Nop domain 299 422 IPR042239 -
Amo01g2103 560 Coils Coil 484 504 - -
Amo01g2103 560 MobiDBLite consensus disorder prediction 458 472 - -
Amo01g2103 560 MobiDBLite consensus disorder prediction 479 506 - -
Amo01g2103 560 Pfam NOP5NT (NUC127) domain 4 69 IPR012974 -
Amo01g2103 560 SMART NOSIC_2 170 222 IPR012976 -
Amo01g2103 560 PANTHER NOP56-LIKE PRE RNA PROCESSING RIBONUCLEOPROTEIN 1 501 - -
Amo01g2103 560 MobiDBLite consensus disorder prediction 518 560 - -
Amo01g2103 560 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 1 501 IPR045056 GO:0030515|GO:0031428|GO:0032040
Amo01g2103 560 MobiDBLite consensus disorder prediction 435 451 - -
Amo01g2103 560 ProSiteProfiles Nop domain profile. 295 413 IPR002687 -
Amo01g2103 560 SUPERFAMILY Nop domain 163 412 IPR036070 -
Amo01g2103 560 Pfam snoRNA binding domain, fibrillarin 177 409 IPR002687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2103 Amo-Chr1 62121982 62125007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2103 K14564 - gmx:100794470 876.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g2103 01 62121982 62125007 Amo11g1657 11 72138064 72141059 hybridization