Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1827 ATGGTGGAGGCACAGACATGGACAACCAGAAGGATGAGCAATCCGAGGTTGTTGGACAACTCATCCACCAACAACAATCCCGACCAAGTACTGGACATCCCGGCGACACCGCCATCGGAAGCAAGAAACAACCACCTAAACGGCCTAAAAAGTGGCATCGCCACCACCACCTCCATGTCCCCAACGATCCTAACTGCAATCATAATTGCGTCGTGGTACTTCTCCAACATCGGCGTCCTCCTCCTCAACAAGTACCTCCTCAGCTTCTATGGTTACCGCTACCCAATCTTTCTCACCATGCTCCATATGCTATCCTGCTCCGCTTACAGCTACGCGTCCATTAACTTCCTGGAGCTCGTTCCTCCTCAGCACATCCACTCCAAGAAGCAGTTCCTTAAGATCCTCGCACTCAGCGCCATCTTCTGCTTCTCTGTTGTCTGCGGCAACACCTCCCTCAGGTACATTCCTGTGTCTTTCAACCAAGCAATAGGAGCAACCACCCCGTTCTTCACAGCCATCTTCTCTTTCATCATAACCTGCAAGAAAGAAACCGGTGAAGTATACGTCGCACTCTTGCCTGTTGTTCTTGGCATCGTAGTCGCCAGCAACAGCGAGCCTCTCTTCCACTTGTTCGGCTTCTTGGTTTGCGTGGGTTCAACCGCGGGTCGAGCACTCAAATCGGTGGTCCAGGGAATCCTCTTAAGTTCAGAAGGCGAAAAGCTTCACTCCATGAACCTTCTTCTATACATGGCTCCAATGGCGGCCATGATATTGCTGCCATTTACTCTCTACATCGAAGGGAACGTTTTCAGTGTGACGATTGAGAAGGCGAAGGAGGATCCGTATATGGTGTTCTTGTTGCTTGGGAATGCCACGGTTGCGTATTTGGTGAATTTGACGAATTTCTTGGTCACGAAGCACACCAGTGCCTTGACTTTACAAGTGTTGGGAAACGCCAAAGCTGCGGTTGCGGCGGTTGTTTCTGTTTTGATATTCAGGAATCCTGTCACGGTTATGGGGATGGCGGGCTTTGGAATAACCGTTATGGGGGTCGTTCTCTACAGTGAGGCTAAGAAGAGATCCAAACTCACAACACATTGA 1101 0.5023 MVEAQTWTTRRMSNPRLLDNSSTNNNPDQVLDIPATPPSEARNNHLNGLKSGIATTTSMSPTILTAIIIASWYFSNIGVLLLNKYLLSFYGYRYPIFLTMLHMLSCSAYSYASINFLELVPPQHIHSKKQFLKILALSAIFCFSVVCGNTSLRYIPVSFNQAIGATTPFFTAIFSFIITCKKETGEVYVALLPVVLGIVVASNSEPLFHLFGFLVCVGSTAGRALKSVVQGILLSSEGEKLHSMNLLLYMAPMAAMILLPFTLYIEGNVFSVTIEKAKEDPYMVFLLLGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVMGMAGFGITVMGVVLYSEAKKRSKLTTH* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1827 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 279 356 - -
Amo01g1827 366 PANTHER SOLUTE CARRIER FAMILY 35 50 363 - -
Amo01g1827 366 SUPERFAMILY Multidrug resistance efflux transporter EmrE 127 203 - -
Amo01g1827 366 MobiDBLite consensus disorder prediction 1 37 - -
Amo01g1827 366 MobiDBLite consensus disorder prediction 1 32 - -
Amo01g1827 366 Pfam Triose-phosphate Transporter family 66 355 IPR004853 -
Amo01g1827 366 PANTHER SUGAR PHOSPHATE TRANSPORTER DOMAIN-CONTAINING PROTEIN-RELATED 50 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1827 Amo-Chr1 47731815 47733441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g1827 1 363 Organic Solute Cotransporters AT1G12500 76.584 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1827 - - gmx:100813464 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1827 01 47731815 47733441 Amo11g1428 11 52613925 52615747 hybridization