Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1806 ATGGCTTTGTTTAAAGCTCTTGTGCTCTTCTTCTTCTTCTTCCTAACCAACGTTTCTCTGCTTCTCAACTTCACTAACGCTGAGGATCCATTTGCTTTCTACAACTTTGAGGTCACTTACCTCACTGCTTCTCCTCTTGGAGTTCCTCAACAGGTCATTGCTATAAACGGCAAGTTTCCAGGTCCAACCATCAATGTGACAACAAACAACAACGTTGTTGTCAATGTCCGGAACAAGCTTGATGAGAACCTCCTCCTTCACTGGTCTGGGGTTCAGCAAAGAAGAAGTTCTTGGCAAGATGGTGTTCTTGGCACAAACTGTCCAATTCCTCCAAAGTGGAACTGGACTTACCAGTTTCAGGTTAAGGATCAGATTGGAAGCTTCTTCTACTTCCCTTCACTTAATATGCAGAGAGCAGCTGGTGGATTTGGTGGATTCATTATAAACAACCGACCCATTATTCCAATTCCTTTTGACACCCCACATGGGGACATTGTCATTATGATTGGCGATTGGTACACTCGCAATCACACGGATTTGAGGAAGGACCTTGATGCTGGAAAAGATCTTGGGATGCCTGATGGTGTTCTCATCAATGGAAAGGGTCCGTATAGATATAATGATACACTTGTTCCCGACGGCATTGATTTTGAGCAGTTTGATGTTCATCCTGGGAAAACTTACCGACTTCGTGTACATAATGTTGGAGTGTCAACAAGTCTGAATTTCAGGATCCAGAGCCATAATTTACTTCTAGCAGAGAGTGAGGGATCGTATACAGTGCAACAGAATTACACTAGCTTAGATATTCATGTTGGACAGTCTTATTCTTTTCTGGTAACCATGGATCAGAACGCAAGTTCAGATTACTATATCGTTGCAAGCGCCAGGTTTGTGAACGAATCACGCTGGCAAAGAGTAACCGGAGTTGGTATCTTGCGCTATACAAATTCCAAGGGTAAGGCGCATGGTCCTCTTCCACCACCTCCAGATGATGAATTTGACAAGACTTTCTCAATGAACCAAGCAAGATCCATCAGATGGAATGTATCAGCAAGTGGTGCTCGTCCCAACCCACAAGGGTCTTTCCGATATGGTTCCATCAATGTGACTGAAATTTATGTACTAAGAAACAAGCCAAGAGAGAAAATCAACGGGAAGAATCGAGCAACACTCAGTGGCATCTCTTTTGTCAATCCTTCCACTCCAATCAGGCTTGCTGACAAGTACAAATTAAAAGGAGTATACAAGCTTGATTTCCCCACCAATCCTATAACTGGACCACCTCAGGCCAAGACATCGGTGATTAATGGAACTTACAGGGGATTTATGGAGATTATACTGCAAAACAACGACACCAAGATGCATTCCTATCACTTGGATGGTTATGCCTTTTTCGTCGTCGGGATGGATTATGGGGAGTGGACTAATAATAGCAGGGGCACATATAACAAATGGGATGGAATAGCTCGCACCACAGCACAGGTTTATCCCGGAGCATGGACAGCAATTTTAGTCTCGCTGGACAATGTCGGAGTTTGGAATCTCAGAACAGAAAACCTCGACAACTGGTATCTCGGTCAAGAAACATACATCAGAGTTGTCAATCCAGAGGCTAACAACAAGACTGAGCTTCCCATGCCAGACAATGCCCTTTTCTGCGGCGCCCTTCAGAAACTGCAGAAGCCTCAACATATTAGTTCCGGTGCATCAATCGGTAAGAATACAGTGAAGCTGTTGTTGACTTGGCTGGCGTTTGTATGCGCCTTGATCCCCATTTTCTAG 1785 0.4415 MALFKALVLFFFFFLTNVSLLLNFTNAEDPFAFYNFEVTYLTASPLGVPQQVIAINGKFPGPTINVTTNNNVVVNVRNKLDENLLLHWSGVQQRRSSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLNMQRAAGGFGGFIINNRPIIPIPFDTPHGDIVIMIGDWYTRNHTDLRKDLDAGKDLGMPDGVLINGKGPYRYNDTLVPDGIDFEQFDVHPGKTYRLRVHNVGVSTSLNFRIQSHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASSDYYIVASARFVNESRWQRVTGVGILRYTNSKGKAHGPLPPPPDDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEIYVLRNKPREKINGKNRATLSGISFVNPSTPIRLADKYKLKGVYKLDFPTNPITGPPQAKTSVINGTYRGFMEIILQNNDTKMHSYHLDGYAFFVVGMDYGEWTNNSRGTYNKWDGIARTTAQVYPGAWTAILVSLDNVGVWNLRTENLDNWYLGQETYIRVVNPEANNKTELPMPDNALFCGALQKLQKPQHISSGASIGKNTVKLLLTWLAFVCALIPIF* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1806 594 Gene3D - 367 565 IPR008972 -
Amo01g1806 594 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 16 566 - -
Amo01g1806 594 Pfam Multicopper oxidase 38 151 IPR011707 GO:0005507
Amo01g1806 594 SUPERFAMILY Cupredoxins 382 555 IPR008972 -
Amo01g1806 594 SUPERFAMILY Cupredoxins 160 357 IPR008972 -
Amo01g1806 594 Pfam Multicopper oxidase 403 538 IPR011706 GO:0005507|GO:0016491
Amo01g1806 594 Pfam Multicopper oxidase 164 317 IPR001117 -
Amo01g1806 594 Gene3D - 21 150 IPR008972 -
Amo01g1806 594 PANTHER MULTI-COPPER OXIDASE 16 566 IPR045087 -
Amo01g1806 594 Gene3D - 162 355 IPR008972 -
Amo01g1806 594 SUPERFAMILY Cupredoxins 27 178 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1806 Amo-Chr1 46150897 46155631 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1806 - - gmx:100788318 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1806 01 46150897 46155631 Amo11g1393 11 50108082 50112821 hybridization