Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g1559 ATGGCCGAATCGGTGGAGCTTCCGAGTCGCTTGGCGATCCTTCCTTTCAGGAACAAGGTCCTCTTACCCGGCGCCATCATCAGAATCCGATGCACTTCCCCTAGCAGTGTGAAGCTGGTGGAGCAAGAACTTTGGCAGCGAGAAGAAAAGGGGTTGATTGGCATCTTGCCAGTGCGTGATGCTGCTGAAATTAAGCCCCTGGGCCCAGTTGTATCTCAAGGTACTGATTCTGTAGACCAAAGCGCAAAAGTCCTAGGTGGTTCATCTGATTCTCATAAGCTTGAAACAAAAAAACCGAATGATGTTGTTCATTGGCATTCCAGAGGGGTAGCTGCTCGAGCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACATAGTTGTTCTTGAAGGCTTATGCAGATTTAGTGTCCAGGAACTTAGCACAAGAGGAACATACCATACTGCAAGGATATCGTCCCTTGAGATGACTAAGACTGAGATGGAACAAGTGGAGCAAGACCCAGATTTCATAATGTTGTCTCGCCAATTTAAAGCAACTGCTATGGAGCTTATTTCTGCTTTGGAACTGAAACAAAAAACTGGTGGAAGGACAAAAGTCCTTTTGGATACTGTTCCAGTTCACAAGTTGGCTGATATATTTGTTGCTAGCTTTGAGATCAGTTTTGAAGAACAGCTATCTATGTTGGATTCAGTTGACCCCAAAGTCAGGCTTTCAAAAGCAACCGAGTTAGTTGATAGGCACTTACAGTCAATTCGTGTTGCGGAGAAAATTTCACAGAAGGTTGAAGGACAGTTGTCAAAATCCCAAAAAGAATTTCTTCTGCGCCAGCAGATGAGGGCTATCAAAGAGGAACTTGGTGATAATGATGATGATGAGGATGACCTGGTTGCCCTGGAACGAAAGATGCAGGGTGCTGGAATGCCTCAGAATATATGGAAGCATGCACACAGAGAGTTGAGGAGACTTAAAAAAATGCAGCCTCAGCAACCTGGGTATACCAGTTCACGGGTTTACCTAGAGCTTCTTGCTGATCTTCCGTGGCAGAGGGCCAGCGAAGAGCTTGAGCTAGACTTAAGAGCTGCGCGGAAGCGTTTGGACAGTGATCACTATGGTTTAGCAAAGGTCAAGCAGCGGATAATTGAATACCTAGCCGTTCGCAAGCTTAAACCAGATGCAAGAGGCCCTGTGTTATGCTTTGTTGGACCACCAGGTGTTGGGAAAACATCATTGGCATCTTCCATTGCTGCTGCCTTGGGAAGGAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATACGTTGGAAGCATGCCTGGGAGACTTATAGATGGATTAAAGAGAGTAGCTGTTTGCAACCCAGTTATGTTGCTTGACGAAGTTGACAAAACAGGTTCTGATGTTCGTGGAGATCCAGCTTCAGCGTTGCTCGAAGTTCTTGATCCAGAGCAAAATAAAACATTCAATGATCACTATTTGAATGTTCCGTTTGATCTATCCAAGGTAATTTTTGTGGCAACAGCAAATAGGATGCAGCCTATTCCTCCACCACTTCTGGATAGAATGGAAGTTATTGAGCTTCCTGGATACACACCTGAGGAGAAGCTCCAAATTGCCATGCATCATTTGATTCCAAGAGTTTTAGACCAGCATGGATTGAGTTCTGAGTTTCTTCAGGTTCCAGAGGAGATGGTGAAACTTGTCATTCAAAGATATACCAGGGAAGCTGGTGTGCGAAACTTGGAAAGGAATCTGGCTGCCCTGGCACGTGCTGCTGCAGTAAAAGTTGCAGAGCAAGAACAGGTAGTTCCACTAAACAAAGGGATGCGGGGACTTGCTACACCACTTATGGAAAACAGACTTGCTGATAGCACTGAAGTTGAAATGGAAGTGATACCGATGGGTGTCAATAGTCGGGAAATATCAAACACGTTCAAGATTGCCTCTCCTCTCATTGTTGACGAAGCTATGCTTGAAAAAGTGCTTGGGCCTCCAAGATTTGATGATAGAGAAGCTGCAGATCGTGTTTCAACCCCTGGAGTCTCTGTTGGACTGGTTTGGACTTCTTTTGGTGGAGAAGTTCAGTTCGTGGAGGCTACGGCAATGGCAGGGAAGGGTGAACTGCATCTCACTGGACAACTTGGTGATGTTATCAAAGAATCAGCTCAAATTGCATTGACATGGGTAAGGGCAAGGGCAACTGACTTTGGGCTGGCTACGGCAGACGGTATTAATCTTTTAGAGGGCCGGGATGTACACGTTCATTTTCCGGCTGGCGCTGTACCTAAAGATGGTCCTTCAGCTGGTGTGACGTTGGTCACAGCGCTGGTATCACTCTTCAGTAAGAAGAGGGTAAGATCAGATACAGCTATGACTGGAGAAATGACATTGAGGGGGCTTGTACTCCCTGTTGGTGGCGTCAAGGATAAGGTAAAGTTCTTATGTCTTCATAATCTGTATAAACTTTCTATGAAGCTACGATGGGTCTTTGTTCCATACAAGGATGAAATAGGATGTTAG 2565 0.4554 MAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDAAEIKPLGPVVSQGTDSVDQSAKVLGGSSDSHKLETKKPNDVVHWHSRGVAARALHLSRGVEKPSGRVTYIVVLEGLCRFSVQELSTRGTYHTARISSLEMTKTEMEQVEQDPDFIMLSRQFKATAMELISALELKQKTGGRTKVLLDTVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKISQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMQGAGMPQNIWKHAHRELRRLKKMQPQQPGYTSSRVYLELLADLPWQRASEELELDLRAARKRLDSDHYGLAKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKRVAVCNPVMLLDEVDKTGSDVRGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMHHLIPRVLDQHGLSSEFLQVPEEMVKLVIQRYTREAGVRNLERNLAALARAAAVKVAEQEQVVPLNKGMRGLATPLMENRLADSTEVEMEVIPMGVNSREISNTFKIASPLIVDEAMLEKVLGPPRFDDREAADRVSTPGVSVGLVWTSFGGEVQFVEATAMAGKGELHLTGQLGDVIKESAQIALTWVRARATDFGLATADGINLLEGRDVHVHFPAGAVPKDGPSAGVTLVTALVSLFSKKRVRSDTAMTGEMTLRGLVLPVGGVKDKVKFLCLHNLYKLSMKLRWVFVPYKDEIGC* 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g1559 854 Pfam ATPase family associated with various cellular activities (AAA) 403 540 IPR003959 GO:0005524|GO:0016887
Amo01g1559 854 Coils Coil 287 307 - -
Amo01g1559 854 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 848 IPR020568 -
Amo01g1559 854 ProSiteProfiles Lon N-terminal domain profile. 11 252 IPR003111 -
Amo01g1559 854 Coils Coil 593 613 - -
Amo01g1559 854 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Amo01g1559 854 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 407 426 - -
Amo01g1559 854 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Amo01g1559 854 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Amo01g1559 854 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 851 IPR027501 GO:0004252|GO:0006515
Amo01g1559 854 Gene3D - 693 850 IPR014721 -
Amo01g1559 854 Gene3D - 543 682 - -
Amo01g1559 854 SMART lon_5 10 252 IPR003111 -
Amo01g1559 854 TIGRFAM lon: endopeptidase La 13 826 IPR004815 GO:0004176|GO:0005524|GO:0006508
Amo01g1559 854 SMART AAA_5 399 544 IPR003593 -
Amo01g1559 854 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 252 IPR003111 -
Amo01g1559 854 Gene3D - 364 542 IPR027417 -
Amo01g1559 854 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
Amo01g1559 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 617 IPR027417 -
Amo01g1559 854 ProSiteProfiles Lon proteolytic domain profile. 691 854 IPR008269 GO:0004176|GO:0004252|GO:0006508
Amo01g1559 854 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 826 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Amo01g1559 854 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 826 - -
Amo01g1559 854 Gene3D - 303 351 - -
Amo01g1559 854 CDD AAA 384 545 - -
Amo01g1559 854 Pfam Lon protease (S16) C-terminal proteolytic domain 668 826 IPR008269 GO:0004176|GO:0004252|GO:0006508
Amo01g1559 854 PIRSF Lon_proteas 1 625 IPR004815 GO:0004176|GO:0005524|GO:0006508
Amo01g1559 854 PIRSF Lon_proteas 651 850 IPR004815 GO:0004176|GO:0005524|GO:0006508
Amo01g1559 854 SUPERFAMILY PUA domain-like 10 251 IPR015947 -
Amo01g1559 854 Gene3D - 161 295 - -
Amo01g1559 854 Gene3D - 1 160 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g1559 Amo-Chr1 32897914 32905548 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g1559 K01338 - gmx:100789982 1451.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g1559 01 32897914 32905548 Amo11g1117 11 34760660 34780513 hybridization