Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0455 ATGTCTTACTCAAGGAGATCAAGGTATTCTCCTTCTCCTTCCCCATCCCCATACAAGGGGTACAGCAGGTACAGCAGGTCCTTATCCAGGTCTCTTTCAATGTCAAGATCAAGATCGAGAAGCCGTTCAAGGAGCGTCTCAAGTGATGCAGAAAATCCTGGAAATAACTTGTATGTGACTGGATTATCTCCTAGGATCACCAAGAGAGAACTGGAGAAGCATTTTGCAGCTGAAGGAAAGGTCATAGATGTACATCTTGTAGTTGATCCGTGGACAAGAGAATCACGTGGGTTTGGCTTTGTGACAATGGCAAATCTTGAGGATGCTGATCGGTGTGTGAAATATTTAAACCGCTCTGTACTTGAAGGGCGTGTAATCACAGTGGAGAAGGCCAGAAGGCGACGTGGCCGAACCCCAACGCCTGGAAGATATCTTGGGCTAAGGACTATTCGAGCACGCCGTCGCTCACGCTCACCAAGCTACTCTTCTCGGCGCTCTCCTAGCTATTCCCCCTACCGAAGAAGCTATAGTCGTTCGCCATATTCTCCAGACCGTAGTAGGAGTCCCTCTTATTCTCCTGACTATCGCCGTAGAAGGTCTTACTCTCCTGACTACCGGCGAAGGAGGTCTTACTCTCCATATTACTACAGTCGACGCAGGTCCCCATATTCTCCATATTATAGTCGTCGCAGGTCGTATTCGCGATATGATCGTTATGAGCGGCGGAGGTCATATTCGCGGTCTCAATCCCCATACAGCAGGTCACCTGTCAGTTATCGTGACAGATCATACTCTCCCTATGACTCAAGGTATGACTCGCCTGATGATCGCTATTACAGAAGGCACCACAACAGGTCAGTTTCTCCAAGTGTCTCCCCTCCCCCAAGGCGAAGGTCGAGGAGAAGCTACTCGCGGAGTGTCACTCCTGTTCGAATGAGGAGCTGCTCTCGAAGCATCTCTCCCCGACGCAGCAGGAGGAGCTACTCACGAAGTGTTTCTCCACCAAGGAAAAGTTCTGGGAGGAGCCATTCAAGAAGCTCTAAAAGGAGTGGTGGTTATTCCAAACTTAGTAGGAGCCCAAGTCCAAGTGTGAGTGCAAGTTCAAGATCATTTTCAAGGTCCAACACTCCTGGATCTGCTTCTCCTTCAACTTAG 1155 0.4935 MSYSRRSRYSPSPSPSPYKGYSRYSRSLSRSLSMSRSRSRSRSRSVSSDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMANLEDADRCVKYLNRSVLEGRVITVEKARRRRGRTPTPGRYLGLRTIRARRRSRSPSYSSRRSPSYSPYRRSYSRSPYSPDRSRSPSYSPDYRRRRSYSPDYRRRRSYSPYYYSRRRSPYSPYYSRRRSYSRYDRYERRRSYSRSQSPYSRSPVSYRDRSYSPYDSRYDSPDDRYYRRHHNRSVSPSVSPPPRRRSRRSYSRSVTPVRMRSCSRSISPRRSRRSYSRSVSPPRKSSGRSHSRSSKRSGGYSKLSRSPSPSVSASSRSFSRSNTPGSASPST* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0455 384 MobiDBLite consensus disorder prediction 132 384 - -
Amo01g0455 384 CDD RRM_RBMX_like 54 131 - -
Amo01g0455 384 SMART rrm1_1 56 129 IPR000504 GO:0003723
Amo01g0455 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 207 289 - -
Amo01g0455 384 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 10 224 - -
Amo01g0455 384 PANTHER TRANSFORMER-2-RELATED 207 289 - -
Amo01g0455 384 PANTHER TRANSFORMER-2-RELATED 10 224 - -
Amo01g0455 384 MobiDBLite consensus disorder prediction 265 283 - -
Amo01g0455 384 Gene3D - 8 139 IPR012677 -
Amo01g0455 384 MobiDBLite consensus disorder prediction 231 247 - -
Amo01g0455 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 126 IPR000504 GO:0003723
Amo01g0455 384 MobiDBLite consensus disorder prediction 325 384 - -
Amo01g0455 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 133 IPR000504 GO:0003723
Amo01g0455 384 MobiDBLite consensus disorder prediction 248 262 - -
Amo01g0455 384 MobiDBLite consensus disorder prediction 161 189 - -
Amo01g0455 384 SUPERFAMILY RNA-binding domain, RBD 43 160 IPR035979 GO:0003676
Amo01g0455 384 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0455 Amo-Chr1 6739520 6743037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g0455 56 138 Eukaryotic Initiation Factors Gene Family AT3G16380 32.530 1.14e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0455 - - adu:107494646 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0216 11 3275338 3278998 Amo01g0455 01 6739520 6743037 hybridization