Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0376 ATGCCGGCAATACTCAGCCTATCCACCGGTCCCGCTGTCAAATTCTCCTTCTCTTGCAACAACCGAGCTTCCAACAAAAGATTCCGCCGCCGTAGTCCGATCCACGCCGTCGCTTCTCCGGTGCCGGCCACATCGGCTAGCCTCTACGAGGTTTTGCGAGTCGAGCAGGATGCGTCGCTGACGGAGATCAAGTCTGCCTTCCGGAGCCTGGCGAAGCTCTACCACCCCGACGTTGCGGCCGTGAGGCGGTTGCCGGATTCTGACGGCGGTTCCGGCACGGACGACGGCGACTTCATCGTGATACGGAACGCATACGAGACGCTATCGGATTCTTCAGCGAGAGCTATGTACGATCTGTCTCTGTCCTCCCGGCGGCGGAGGTTTCCGGAGCCATTGAGCGTGAAACGGAATTCCGATCATTACTCGACCCGAAGATGGGAAACGGACCAATGCTGGTAG 459 0.5904 MPAILSLSTGPAVKFSFSCNNRASNKRFRRRSPIHAVASPVPATSASLYEVLRVEQDASLTEIKSAFRSLAKLYHPDVAAVRRLPDSDGGSGTDDGDFIVIRNAYETLSDSSARAMYDLSLSSRRRRFPEPLSVKRNSDHYSTRRWETDQCW* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0376 152 SMART dnaj_3 46 113 IPR001623 -
Amo01g0376 152 CDD DnaJ 49 110 IPR001623 -
Amo01g0376 152 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 5 152 - -
Amo01g0376 152 PRINTS DnaJ domain signature 49 67 IPR001623 -
Amo01g0376 152 PRINTS DnaJ domain signature 67 82 IPR001623 -
Amo01g0376 152 PRINTS DnaJ domain signature 93 113 IPR001623 -
Amo01g0376 152 SUPERFAMILY Chaperone J-domain 45 122 IPR036869 -
Amo01g0376 152 Pfam DnaJ domain 48 118 IPR001623 -
Amo01g0376 152 ProSiteProfiles dnaJ domain profile. 47 121 IPR001623 -
Amo01g0376 152 ProSitePatterns Nt-dnaJ domain signature. 98 117 IPR018253 -
Amo01g0376 152 Gene3D DnaJ domain 35 145 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0376 Amo-Chr1 5985212 5985670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0376 - - adu:107458220 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0289 11 4287672 4288525 Amo01g0376 01 5985212 5985670 hybridization