Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g0310 ATGAACAACGTTGGCGATCTCCACAAGGTTTGGGAAATCAACGCTCTGAAGAGGAAGCCGTTGCAAGAAGAAGCCACCAAGATGTTGGAGAAGATCGCCAAACAGGTCCAGCCCATTATGCGCAAGCACAAATGGAGGGTCAAGGTTCTCTCTGAATTCTGCCCAAACAATCCGCGACTTTTGGGGTTGAATGTTGGAGCTGGTATACATGTGAAGTTGCGATTGCGCAGACCGAACAGGGATTTGGACTTCTACCCATTTGATCAAGTTTTGGATACGATGCTTCATGAGCTTTGCCATAATGCCCATGGTCCTCATAATGCCAACTTCTACAAGCTTTGGGATGAACTTAGAAAGGAATGTGAAGAGCTGATGTCCAATGGAGTAACTGGCTCGGGAGAGGGGTTTGACCTTCCAGGAAGGCGCTTAGGTGGTCATTCCCGGCAGCCACCCCTTTCATCACTCCGTAAAACAGCACTTGCAGCTGCAGAAAAGAGATCGCGATTGGGATCACTCCTTCCCTCTGGACCTAACCGTCTTGGGGGTGATAGTGTTATAATGAAGGCACTTACTCCAGTGCAAGCGGCTGCAATGGCTGCAGAAAGGAGATTACAGGATGACATATGGTGTGGTTCTCAAACCTGTGAAGCTTCAGATCATGAAGATTTTAACTTTGAACCTGCTGAGAATATTGAGCGCAAGGGTAAAAATGTGGGTAGCTCAAGACTTCGAGACAATTCTTCTCTACCTTTGGATCTGAAATCTCAGAAAAGGAGTCGTGTCATGGATTCAAGTTTACTGGATTGCTCGTCTAGTACCCCTAAATATGTTGATTTGACTATGGATGCACCACAGATTGGATCTATCATTGAACAATGCACTGTGACTCAAGGAAGGGGTGTTGGTGGATTAGAAAGCATTTCACATTCTGAGACAAATTCTCGGATAGGATCTATTTCTGCAAATATTCCAAGCTCCTCCACTCCACTTTCTGGTGATAATAATACATCTCATTCTGAAGAACTTGCAATGTGGGAGTGCTCAATGTGCACTCTGTTAAATAAAACATTAGCTCCATTATGTGAGTTGTGTGGCACACAACAGCCGAAAGATTTTGCCACCAYATACAGTACTTGGTCTTGTAAATTCTGTACGCTGGAAAACAGTGTGAAGTTGGACAAATGCTCAGCTTGTGATCAGTGGAGATACTCTCTTGGTGCACCAGTGTCAGCCCGTGCACCTAACGTCGGCACTTGA 1257 0.4543 MNNVGDLHKVWEINALKRKPLQEEATKMLEKIAKQVQPIMRKHKWRVKVLSEFCPNNPRLLGLNVGAGIHVKLRLRRPNRDLDFYPFDQVLDTMLHELCHNAHGPHNANFYKLWDELRKECEELMSNGVTGSGEGFDLPGRRLGGHSRQPPLSSLRKTALAAAEKRSRLGSLLPSGPNRLGGDSVIMKALTPVQAAAMAAERRLQDDIWCGSQTCEASDHEDFNFEPAENIERKGKNVGSSRLRDNSSLPLDLKSQKRSRVMDSSLLDCSSSTPKYVDLTMDAPQIGSIIEQCTVTQGRGVGGLESISHSETNSRIGSISANIPSSSTPLSGDNNTSHSEELAMWECSMCTLLNKTLAPLCELCGTQQPKDFATXYSTWSCKFCTLENSVKLDKCSACDQWRYSLGAPVSARAPNVGT* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g0310 418 SUPERFAMILY Ran binding protein zinc finger-like 341 368 IPR036443 -
Amo01g0310 418 ProSitePatterns Zinc finger RanBP2-type signature. 345 364 IPR001876 -
Amo01g0310 418 ProSitePatterns Zinc finger RanBP2-type signature. 379 398 IPR001876 -
Amo01g0310 418 Gene3D - 338 377 - -
Amo01g0310 418 PANTHER ZINC ION BINDING PROTEIN 3 418 - -
Amo01g0310 418 MobiDBLite consensus disorder prediction 132 157 - -
Amo01g0310 418 ProSiteProfiles WLM domain profile. 1 205 IPR013536 -
Amo01g0310 418 ProSiteProfiles Zinc finger RanBP2 type profile. 341 370 IPR001876 -
Amo01g0310 418 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 3 418 - -
Amo01g0310 418 SMART zf_4 377 401 IPR001876 -
Amo01g0310 418 SMART zf_4 343 367 IPR001876 -
Amo01g0310 418 Pfam WLM domain 9 205 IPR013536 -
Amo01g0310 418 ProSiteProfiles Zinc finger RanBP2 type profile. 375 404 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g0310 Amo-Chr1 5011032 5014526 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g0310 K22685 - gmx:100795976 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo11g0357 11 5681227 5684490 Amo01g0310 01 5011032 5014526 hybridization