Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g1619 ATGTGCCTCCCTACTGCATCAGGCCGGCACACTTCACAAACTCAAACCCCTCTCAAGCTCGCCCCTCTCGAATTATCTTCCCCTCGCCCCTCTCAAATTATCTTCTCCAGCGCCATGGATCCGAACCCCGGAACCTTCCCTTTTCTCTCCTACGTCATGAGTCGTCTCCCTTCTCTGGGCTCTACTTCTAGACCCTCCTCCTCCCTTGAATTCGATATCGAACAACCTCACCCTCTGCCGCCACTTCCCCATCTTCCTTCATCTTCTTCGCCTGAATCTGAAATTGTGGGCAAAATGCCTCAACTTACTGATCCCAAACTCTTGGCTGCCATGACCCGCGCAGTCTCCGAAGTCGCCCAGACCCGATCAGTACTCAAGCTCATTGGGGATCGACCCGACCATGAAGACGTCGATCGTGCAAAGGCCAAGCTTGCGGATATTGAAGCCCTTTTGTCCAAGAAACTTGAGGAGATTGTGCTGTCCCACAGGCCCGAGAATGTTGACATCCTTCAATGGCGAGCTCATCAAGCCGAAAAAGAGAAGGAGTGCAGGGAATTAGCGGAAAAAGAGAAGCGGCCGTATAAATCACTGATACAGTTGGACGAGATGCACGATGCTTATGAGAAAATGCTTACGGATGCGGAGAAGAGGCTGGTGAAAATTTACGAGTCTGATGGAAAAGTAGCCGATAGTGCTGAGGGTGAGGAAGATGAGCATGTTGGGGAGGAGGTTAACGAAGAGGTTGTGGGGATACTACGGGAGGCTTTTGGAAAGGGGATGGACCGATTGGATCTTTCAGGGCGGCGGTTAAGGTTGTTGCCCGAGGCCTTTGGGCGAATTCCTGGCTTGGTTGCGCTTGATCTTTCGAACAATCAGCTCGAGGTGATCCCTGACTCAATAGCTGGGTTGCAAAGTCTTGAGGAGCTTAACGTCTCTTCAAATCTTTTGGAGTATCTTCCAGATTCAATTGGCTTGTTACAAAAGTTGAAATTTCTGAATGTCTCTGGGAACAAGCTAAGTGCCCTTCCTGATTCCATCTGTCATTGCAGGTCACTGGTGGAGCTTGATGTAAGCTTCAATGGGCTGACATATTTGCCTACAAACATTGGACTTGAACTGGTGAACTTGCAGAAGCTGTCAATTCAATTGAATAAGATTCGGTCTCTTCCATCGTCTGTTTGTGAAATGAGGGCCTTGCACTATCTAGATGCTCATTTTAATGAACTTCATGGGCTTCCTATTGCTATAGGGAAATTAACTAATCTTGAAGTTCTCAACCTGAGCAGTAATTTCAGTGACCTTAGAGAACTTCCCGATACATTTGGTGATCTGACTAACCTCAGGGAATTGGATCTCAGCAACAATCAGATCCATGCGCTTCCTGATACATTTGGCCGCCTCGACAATATGGTCAAGCTCAACTTGGAGCAGAACCCTCTGGAATTGCCACCAAAGGAAATTGTAAATGAAGGGGTTGAAGCCATAAAAACTTTTATGGCTAAGAGGTGGGTTGATATATTGCTTGAGGAAGAAAGGAAAAGCCGTGAAATTCAGGAACTGCCAGAGGCTGGCTGGTTAACACGAAGCACCTCCTGGTTGAAGAATTATGTATCTAATGTTTCTGGAAGTGTTACCGAGTATCTGGGATCTGCCATAGGATCACCTAGGACTCCAAGAGATCCTTGTCTTGATCAGCAGCTTTAA 1704 0.4748 MCLPTASGRHTSQTQTPLKLAPLELSSPRPSQIIFSSAMDPNPGTFPFLSYVMSRLPSLGSTSRPSSSLEFDIEQPHPLPPLPHLPSSSSPESEIVGKMPQLTDPKLLAAMTRAVSEVAQTRSVLKLIGDRPDHEDVDRAKAKLADIEALLSKKLEEIVLSHRPENVDILQWRAHQAEKEKECRELAEKEKRPYKSLIQLDEMHDAYEKMLTDAEKRLVKIYESDGKVADSAEGEEDEHVGEEVNEEVVGILREAFGKGMDRLDLSGRRLRLLPEAFGRIPGLVALDLSNNQLEVIPDSIAGLQSLEELNVSSNLLEYLPDSIGLLQKLKFLNVSGNKLSALPDSICHCRSLVELDVSFNGLTYLPTNIGLELVNLQKLSIQLNKIRSLPSSVCEMRALHYLDAHFNELHGLPIAIGKLTNLEVLNLSSNFSDLRELPDTFGDLTNLRELDLSNNQIHALPDTFGRLDNMVKLNLEQNPLELPPKEIVNEGVEAIKTFMAKRWVDILLEEERKSREIQELPEAGWLTRSTSWLKNYVSNVSGSVTEYLGSAIGSPRTPRDPCLDQQL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g1619 567 SMART LRR_bac_2 373 392 - -
Alju13g1619 567 SMART LRR_bac_2 419 440 - -
Alju13g1619 567 SMART LRR_bac_2 280 299 - -
Alju13g1619 567 SMART LRR_bac_2 349 368 - -
Alju13g1619 567 SMART LRR_bac_2 326 345 - -
Alju13g1619 567 SMART LRR_bac_2 444 463 - -
Alju13g1619 567 SMART LRR_bac_2 303 322 - -
Alju13g1619 567 ProSiteProfiles Leucine-rich repeat profile. 446 467 IPR001611 GO:0005515
Alju13g1619 567 Coils Coil 137 157 - -
Alju13g1619 567 ProSiteProfiles Leucine-rich repeat profile. 305 326 IPR001611 GO:0005515
Alju13g1619 567 MobiDBLite consensus disorder prediction 63 97 - -
Alju13g1619 567 FunFam Plant intracellular Ras-group-related LRR protein 9 179 364 - -
Alju13g1619 567 PRINTS Leucine-rich repeat signature 283 296 - -
Alju13g1619 567 PRINTS Leucine-rich repeat signature 444 457 - -
Alju13g1619 567 Gene3D Ribonuclease Inhibitor 384 501 IPR032675 -
Alju13g1619 567 Gene3D Ribonuclease Inhibitor 194 382 IPR032675 -
Alju13g1619 567 MobiDBLite consensus disorder prediction 1 21 - -
Alju13g1619 567 PANTHER LEUCINE-RICH REPEAT-CONTAINING 309 489 - -
Alju13g1619 567 Pfam Leucine Rich repeat 348 363 IPR001611 GO:0005515
Alju13g1619 567 FunFam Plant intracellular Ras-group-related LRR protein 2 368 540 - -
Alju13g1619 567 Pfam Leucine rich repeat 281 339 IPR001611 GO:0005515
Alju13g1619 567 Pfam Leucine rich repeat 421 480 IPR001611 GO:0005515
Alju13g1619 567 ProSiteProfiles Leucine-rich repeat profile. 328 349 IPR001611 GO:0005515
Alju13g1619 567 SMART LRR_typ_2 280 302 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 373 396 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 350 372 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 444 467 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 326 349 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 303 325 IPR003591 -
Alju13g1619 567 SMART LRR_typ_2 419 443 IPR003591 -
Alju13g1619 567 MobiDBLite consensus disorder prediction 1 23 - -
Alju13g1619 567 SUPERFAMILY L domain-like 262 481 - -
Alju13g1619 567 Coils Coil 197 217 - -
Alju13g1619 567 ProSiteProfiles Leucine-rich repeat profile. 282 304 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g1619 Alju-ChrAlju13 34443688 34450114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju13g1619 283 485 Receptor kinase-like Gene Family AT5G07180 31.624 4.79e-13 70.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2505 06 52005558 52007796 Alju13g1619 13 34443688 34450114 CCT
Alju13g1619 13 34443688 34450114 Alju13g1619 13 34443688 34450114 ECH