Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0908 ATGTCCACCGCCGAAGCCACCGAGAACGGCGCCACCACGGCGTTGGAATCCCAACCACCTGTTGTCGCATCAGACAATACCTCCGCCGCCGCTACCAAGGCTGCTGCTGATGCGAACGCCGCCCCGGGCAACCCAACCAGTGAGGAGCCCGAGTCCGAGATTCCTAAGGCAGACGAAGCTTCCGCCGATCAGACCGCTGCTACCACCACTAACGCTGCCCCTACCACTCCACCTGAGAAGAGATGGCCGGGTTGGCCTGGGGATTGTGTGTTCCGGCTCATTGTGCCGGTCCTCAAGGTAGGTAGTATTATCGGCCGGAAGGGTGAGCTCATTAAGAAGATGTGCGAGGAGACTCGAGCGCGCATTCGTGTTCTCGATGGTGCAGTGGGCACTCCGGATCGAATTGTGCTCATATCAGGGAAGGAAGAGCCAGAAGCAACTCTTTCCCCTGCAATGGATGCTGCAATAAGGGTGTTTAAGCGTGTCTATGGATTGTCTGAAGGTGATGGTGAATCAGGACCTGCTGGTGTTGCATATGTTTCTGTTCGTTTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCTTCTGCTCGTGTATTGTCTGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAGTTGCAGGGAGAGGCCTTGAAGGTTCTTAAGGCTCTGGAAGCAGTGGTTGGTCACCTGCGAAAGTTCTTGGTTGATCATAGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATACAACAACCTCACAAGACCGCCAAGCAGAACCCTGGGCTGACAAGACATCTCTGCATAGTGCTTCACAAGCTAGCATTAGTGCTGATGGACCTCTTTCAACAAAAAGGGATTCTCTCTATGTTGAACGTGAAACTCATTTGGACTCACAACTCCCTTCCTCAGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGCGTTCGTTCTTCAACACATAGTCGTGGCGGGGCTCCCATTGTCACCAATGTGATACAAACAATGCAAATACCACTATCCTATGCGGAGGACATAATTGGGATTCAAGGGACTAATATTGCTTACATTCGCCGTACTAGTGGAGCCATACTGACTGTGCAAGAGAGTAGGGTGCCTGATGAAATTATTGTGGAAATTAAGGGCACCACAACACAAGTCCAATTGGCACAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCTCTAGCAGTTACGGTAGGTTAGATGCAGGTGGTCTGAGGTCTTCATATGCTCAGTTGGGAGGCGGTACAACCTACTCATCTTCCTCAGTCACCTCACAGCCCTACACAGGTTATGGCTCTTCTGGTTTAGGAGGCTACAGATTGTTGCGTGGCTTTGCCTTGTTCTCTTGTGTCTCATGGCGTTTGGGAGTTCTCATATTTGCTCTATTCGTGGCCTCGGACCCTGTTCGAGCGCTCTTTATCTCTTTCCAAGGGAAGCTTTAA 1548 0.4974 MSTAEATENGATTALESQPPVVASDNTSAAATKAAADANAAPGNPTSEEPESEIPKADEASADQTAATTTNAAPTTPPEKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEATLSPAMDAAIRVFKRVYGLSEGDGESGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQESTGASARVLSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKKTYNTTTSQDRQAEPWADKTSLHSASQASISADGPLSTKRDSLYVERETHLDSQLPSSAMSLYGQDSSLPGVRSSTHSRGGAPIVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPASSSYGRLDAGGLRSSYAQLGGGTTYSSSSVTSQPYTGYGSSGLGGYRLLRGFALFSCVSWRLGVLIFALFVASDPVRALFISFQGKL 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0908 515 ProSiteProfiles Type-1 KH domain profile. 354 417 - -
Alju13g0908 515 CDD KH-I_PEPPER_rpt2_like 181 253 - -
Alju13g0908 515 SMART kh_6 353 422 IPR004087 GO:0003676
Alju13g0908 515 SMART kh_6 178 253 IPR004087 GO:0003676
Alju13g0908 515 SMART kh_6 87 160 IPR004087 GO:0003676
Alju13g0908 515 MobiDBLite consensus disorder prediction 273 304 - -
Alju13g0908 515 MobiDBLite consensus disorder prediction 62 76 - -
Alju13g0908 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 81 143 IPR036612 GO:0003723
Alju13g0908 515 MobiDBLite consensus disorder prediction 1 83 - -
Alju13g0908 515 Gene3D K Homology domain, type 1 353 451 IPR036612 GO:0003723
Alju13g0908 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 349 424 IPR036612 GO:0003723
Alju13g0908 515 Gene3D - 88 256 - -
Alju13g0908 515 MobiDBLite consensus disorder prediction 1 33 - -
Alju13g0908 515 ProSiteProfiles Type-1 KH domain profile. 88 155 - -
Alju13g0908 515 CDD KH-I_PEPPER_rpt1_like 88 154 - -
Alju13g0908 515 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 175 260 IPR036612 GO:0003723
Alju13g0908 515 ProSiteProfiles Type-1 KH domain profile. 179 248 - -
Alju13g0908 515 Pfam KH domain 357 419 IPR004088 GO:0003723
Alju13g0908 515 Pfam KH domain 91 143 IPR004088 GO:0003723
Alju13g0908 515 Pfam KH domain 182 248 IPR004088 GO:0003723
Alju13g0908 515 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 77 443 - -
Alju13g0908 515 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0908 Alju-ChrAlju13 27111517 27117159 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g0908 13 27111517 27117159 Alju13g0908 13 27111517 27117159 ECH