Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju13g0851 ATGTTCAAGCTGCTTCGTAAAGCTTACCTTCTCAGGAGCTCTCTTTTCGGCCATGACGTTACTACGACGGGCTTTAGACATGGATTATTGGGCACATCGCAAATTTTAAGCTTCTCAACTCGAGGTAAAAAGGGTTCAAAATCAGATGGAAGTGATTCATGTGAAGAAAATACATCTAAGAAAGAGTCGGCCATACAAAAAGCCCTGGATCAGATCACTTCTGCACATGGAAAGGGAACTATCATGTGGCTTGGTCGCTCTGTCTCTGAAAAACATGAACCTGTACCTGTAGTGTCAACTGGTTCTTTTGCTCTTGATATGGCATTAGGAGTTGGTGGACTTCCAAAGGGACGTGTTGTGGAAATATTTGGGCCAGAGGCTTCTGGGAAAACTACTCTTGCTTTACATGTGATTGCAGAAGCGCAGAAGCAAGGAGGTTATTGTGCTTTTATTGATGCTGAGCATTCACTTGATAAAAAACTCGCGGAGTCTATTGGTGTAAATACTCAGAAATTGCTTCTCGCTCAACCTGATTGTGGTGAACTAGCACTTAGTCTTGTTGATACCTTAATTCGAAGTGATTCACTTGACGTAGTTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAGATGGGGGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCGCTTCGGAAATTGTGCCACTCTTTATCAATGTCCAATTGTATATTGATTTTTACAAACCAGGTGAGGTCAAAGCTTTCTACTTTTGGGGGGTTTGGCGGGCCAACGGATGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGCGAATAGGATTTGTTAAGAAGGGAGAAGAGACTCTAGGAAGCCAGATCCTTGTGAAGGTTGTGAAGAACAAGCTTGCTCCTCCGTTTAAAACTGCACAGTTCGAGCTTGAGTTTGGAAAGGGCATATGTAGAGAAGCAGAGGTCTTAGATTTGAGCCTAAAACACAAATTCATATCCAAGTCTGGTTCATTTTACAACTACAATGGCAAGAACTTCCATGGCAAGGATGCTCTTAAGAAGTTCCTGGTCAGTAACCCTAGTGTTCAAGAAGAACTTGTTCTGGAGCTGAGGGAAAAGCTTCTTACTGCTGAGAAAGAAGCAGAGGTGACTGATGAAGATGAAGTTGTATCACCTTATTCTACTGATGAAGAAGCTGCTGCTATTGCTGCTGCAGAAGCATGA 1263 0.4307 MFKLLRKAYLLRSSLFGHDVTTTGFRHGLLGTSQILSFSTRGKKGSKSDGSDSCEENTSKKESAIQKALDQITSAHGKGTIMWLGRSVSEKHEPVPVVSTGSFALDMALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCAFIDAEHSLDKKLAESIGVNTQKLLLAQPDCGELALSLVDTLIRSDSLDVVVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSMSNCILIFTNQVRSKLSTFGGFGGPTDVTCGGNALKFYASVRLNIKRIGFVKKGEETLGSQILVKVVKNKLAPPFKTAQFELEFGKGICREAEVLDLSLKHKFISKSGSFYNYNGKNFHGKDALKKFLVSNPSVQEELVLELREKLLTAEKEAEVTDEDEVVSPYSTDEEAAAIAAAEA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju13g0851 420 Gene3D - 93 399 IPR027417 -
Alju13g0851 420 PRINTS RecA protein signature 358 375 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 PRINTS RecA protein signature 152 181 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 PRINTS RecA protein signature 305 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 PRINTS RecA protein signature 272 300 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 PRINTS RecA protein signature 186 215 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 PRINTS RecA protein signature 224 253 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 Hamap Protein RecA [recA]. 61 390 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 Pfam recA bacterial DNA recombination protein 64 329 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 SUPERFAMILY RecA protein, C-terminal domain 331 386 IPR023400 -
Alju13g0851 420 SMART AAA_5 116 290 IPR003593 GO:0016887
Alju13g0851 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 329 IPR027417 -
Alju13g0851 420 MobiDBLite consensus disorder prediction 40 60 - -
Alju13g0851 420 FunFam Recombinase RecA 92 392 - -
Alju13g0851 420 MobiDBLite consensus disorder prediction 45 60 - -
Alju13g0851 420 ProSitePatterns recA signature. 275 283 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Alju13g0851 420 ProSiteProfiles RecA family profile 1. 94 253 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Alju13g0851 420 CDD RecA 95 331 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 ProSiteProfiles RecA family profile 2. 263 334 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Alju13g0851 420 NCBIfam recombinase RecA 61 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Alju13g0851 420 Coils Coil 380 400 - -
Alju13g0851 420 PANTHER RECA 38 401 IPR013765 GO:0003697|GO:0005524|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju13g0851 Alju-ChrAlju13 25958766 25963220 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju13g0851 13 25958766 25963220 Alju13g0851 13 25958766 25963220 ECH