Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1436 ATGAGAGAATTTAGCTTCAGAAGCCTCACATTTATGGTTTTGGTTGCATTTCTAGTGTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAACAGAGATGTGTCAGCTTCTCTGTACAAGAAGAAAGGAAAGAGCCATGGCAATAAACACAACAACCACCATGGAGGAGGAGGAGGAGGATCACATTCTAAACCAAAATCTCCTCCACATTATAAAATTACTCCATCACCACCAACTTCATCACTACCACCACCACAACCACCAATTCCTAAGCCAAAGAAAGGAACTCCTTCAGCTTCACCACCAAAAGGTTACAATGTGGGTCATTCTTCCACCTTCAATGTCCTAGATTTTGGAGCTAAGGGCGATGGAAAAACTGATGATACAAAGGCATTTGAAGCTGCATGGGCAGCTGCATGTAAGGTACAAGCATCAACGATGCTCATCCCAGCAGATTACGTCTTCTTCGTGGGACCCATTTCCTTCTCTGGTCCATACTGCAAACCCAATATAGTTTTTCAGCTTGATGGAACAATTATTGCCCCAACAAATCCCCAGGCGTGGGGCAGAGGATCGTTGCAGTGGTTGGATTTCACAAAGCTGGTTGGAATTACCATTCAAGGAAAGGGAGTCATTGATGGAAGAGGCTCAGTCTGGTGGCAAGACCAGCCATTTGATAATCCCATTGATGATGAAGAAAAGCTCATAGTCCCACTAAACAACTCTGCGAAGAGGCCTCCTCCGATGCCGGTTCAAAGTGAGCTGGGAGGGAAAATGCCATTCATCAAGCCAACTGCACTACGGTTTTATGGCAGTTTTAATCCAACGGTCACGGGCATAACAATTCAAAATAGCCAACAGTGCCACCTCAAGTTTGATAATTGCAATGGTGTCCTGGTCCATGATGTGAGCATTTCATCTCCTGGAGACAGTCCCAATACAGATGGAATTCACCTTCAGAATTCCAAAGATGTTTTGATTCACAGCAGTAAATTAGCTTGTGGGGATGACTGTATTTCCATACAAACTGGATGCTCAAATGTATATGTGCACAACGTGAACTGCGGCCCAGGGCACGGAATCAGCATTGGAAGTTTAGGGAAGGATAACACAAGAGCCTGTGTCTCAAACATTACTGTCAGAGATGTCAATATGCACAACACAATGAATGGTGTCAGAATCAAAACGTGGCAGGGGGGATCAGGTTCTGTACAGGGGGTCTTCTTCTCAAACATTCAAGTTTCTGAAGTTCAACTGCCAATTGTGATAGACCAATATTATTGTGATAAAAGGGCATGCAAAAACCAGACATCAGCTGTGGCTCTTCAAGGAATCACCTATGAAAGAATAAGAGGAACATACACAGTCAAGCCCGTGCATTTTGCCTGTAGCGATAGCCTGCCATGTGCAGATGTTACTTTAACCTCCATAGAGCTAAAACCACTTCAAGAACAATACCACCTATATGATCCATTCTGCTGGCAGACTTTTGGAGAATTAAGAACTCCGACAACTCCACCAATTGCTTGTCTGCAGATTGGGAAGCCATCAAGCAATCGGGTTCAGATTGATCATGATCTGTGTGGATAG 1611 0.442 MREFSFRSLTFMVLVAFLVWSSNFEACIARRGKHWRQNRDVSASLYKKKGKSHGNKHNNHHGGGGGGSHSKPKSPPHYKITPSPPTSSLPPPQPPIPKPKKGTPSASPPKGYNVGHSSTFNVLDFGAKGDGKTDDTKAFEAAWAAACKVQASTMLIPADYVFFVGPISFSGPYCKPNIVFQLDGTIIAPTNPQAWGRGSLQWLDFTKLVGITIQGKGVIDGRGSVWWQDQPFDNPIDDEEKLIVPLNNSAKRPPPMPVQSELGGKMPFIKPTALRFYGSFNPTVTGITIQNSQQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKLACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITVRDVNMHNTMNGVRIKTWQGGSGSVQGVFFSNIQVSEVQLPIVIDQYYCDKRACKNQTSAVALQGITYERIRGTYTVKPVHFACSDSLPCADVTLTSIELKPLQEQYHLYDPFCWQTFGELRTPTTPPIACLQIGKPSSNRVQIDHDLCG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1436 536 Pfam Glycosyl hydrolases family 28 149 231 IPR000743 GO:0004650|GO:0005975
Alju12g1436 536 Pfam Glycosyl hydrolases family 28 270 487 IPR000743 GO:0004650|GO:0005975
Alju12g1436 536 ProSitePatterns Polygalacturonase active site. 359 372 IPR000743 GO:0004650|GO:0005975
Alju12g1436 536 SUPERFAMILY Pectin lyase-like 117 528 IPR011050 -
Alju12g1436 536 PANTHER - 118 504 - -
Alju12g1436 536 MobiDBLite consensus disorder prediction 48 113 - -
Alju12g1436 536 Gene3D - 112 526 IPR012334 -
Alju12g1436 536 SMART pbh1 382 403 IPR006626 -
Alju12g1436 536 SMART pbh1 329 350 IPR006626 -
Alju12g1436 536 SMART pbh1 302 328 IPR006626 -
Alju12g1436 536 SMART pbh1 352 372 IPR006626 -
Alju12g1436 536 FunFam polygalacturonase At1g48100 109 520 - -
Alju12g1436 536 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1436 Alju-ChrAlju12 35572985 35577440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g1436 2 535 Glycoside Hydrolase AT1G60590 67.339 0.0 709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1436 12 35572985 35577440 Alju12g1436 12 35572985 35577440 ECH