Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g1360 ATGAACTCCGGCAAGGAGAATACCTCCACGGCGAGCAACGACGTACACTTTCACTCTGTCTCCCACTTCAGTTTCTTCCCCGAGTGTCTGCAGTGGCCGGCCGGCACAGAAACTTTGACCTACGCGTTCTTGCCTAAAAACGACCTAACAGACAGCGTGAAGAGCGTGTTCGCCTCGGCTTTCAACCGATGGTCAGAGGTAATGGCGTTTAAATTCACGGAAGCGTCATCGTACGAAACAGCAGATATCAAGATAGCGTTCTACTCAGGAGACCACGGAGACAGAGCGCCATTCAATGGACCTTTGATGACGCTGACCCACGCGTTTGCACTAACGGATGATAGATTCCATCTAGACATGGAGGAGAACTGGGTGGTATCGGACGATGTGATGCAATCGACGCTGGATAAGGCGTTTGATCTGGAGTCGGTGGCGGTACATGAGATCGGGCACTTGTTAGGGTTGGGACTTGGGACACTCATCAGTGGAGGAGGCGATCATGTTCCCGTCGATACCGCCCAAGATAGGGAAGGTGACTCTAGCGGCCGACGATATTCAAGGAATTCACCTACTTTACAGATCGACTCCTAA 591 0.5195 MNSGKENTSTASNDVHFHSVSHFSFFPECLQWPAGTETLTYAFLPKNDLTDSVKSVFASAFNRWSEVMAFKFTEASSYETADIKIAFYSGDHGDRAPFNGPLMTLTHAFALTDDRFHLDMEENWVVSDDVMQSTLDKAFDLESVAVHEIGHLLGLGLGTLISGGGDHVPVDTAQDREGDSSGRRYSRNSPTLQIDS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g1360 196 Gene3D Collagenase (Catalytic Domain) 5 158 IPR024079 GO:0008237
Alju12g1360 196 Pfam Matrixin 36 156 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Alju12g1360 196 SMART col_5 28 189 IPR006026 GO:0006508|GO:0008237|GO:0008270
Alju12g1360 196 MobiDBLite consensus disorder prediction 168 196 - -
Alju12g1360 196 PRINTS Matrixin signature 81 109 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju12g1360 196 PRINTS Matrixin signature 144 169 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju12g1360 196 PRINTS Matrixin signature 57 72 IPR021190 GO:0004222|GO:0006508|GO:0008270
Alju12g1360 196 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 25 156 - -
Alju12g1360 196 PANTHER MATRIX METALLOPROTEINASE 14 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g1360 Alju-ChrAlju12 34808087 34808677 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g1360 12 34808087 34808677 Alju12g1360 12 34808087 34808677 ECH