Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0399 ATGGCGCCAGTGTCAGCTCTCGCGAAGTACAAGCTGGTATTCTTGGGAGATCAGTCCGTGGGGAAAACCAGCATCATCACCCGCTTTATGTACGATAAATTTGATAACACATATCAGGCTACAATTGGTATTGATTTTCTATCCAAAACTATGTACCTTGAAGATCGAACTGTTCGGCTGCAGTTGTGGGATACGGCTGGACAGGAGAGATTTAGAAGTCTTATTCCAAGCTACATTAGGGATTCATCTGTTGCTGTCATCGTTTATGATGTTGCAAGCCGGCAGACTTTCCTGAATACAGTGAAGTGGATTGAAGAAGTCCGGAGTGAGAGGGGCAGTGATGTCATCATTGTTCTTGTTGGGAACAAAACTGACCTTGTTGAGAAGAGGCAAGTCTCCACAGAGGAAGGGGAAGCAAAGGCCCGTGATCTTAATGTCATGTTCATTGAAGCTAGTGCCAAAGCTGGCTTTAATATCAAGGCTCTCTTTCGGAAAATTGCTGCTGCGTTGCCCGGAATGGAAACATTATCTTCAACAAAACAAGAAGATTTGGTTGACGTGAACCTCAAGTCTTCTGGTGGAGCCGAGTCTCAACCTCAGTCTGGTGGATGTGCTTGCTGA 621 0.4541 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTVKWIEEVRSERGSDVIIVLVGNKTDLVEKRQVSTEEGEAKARDLNVMFIEASAKAGFNIKALFRKIAAALPGMETLSSTKQEDLVDVNLKSSGGAESQPQSGGCAC 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0399 206 NCBIfam small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Alju12g0399 206 CDD Rab6 10 170 - -
Alju12g0399 206 Gene3D - 6 200 IPR027417 -
Alju12g0399 206 SMART rab_sub_5 10 173 - -
Alju12g0399 206 Pfam Ras family 11 169 IPR001806 GO:0003924|GO:0005525
Alju12g0399 206 PANTHER RAS-RELATED PROTEIN RAB 10 181 - -
Alju12g0399 206 SMART ras_sub_4 7 173 - -
Alju12g0399 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
Alju12g0399 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Alju12g0399 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Alju12g0399 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Alju12g0399 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Alju12g0399 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Alju12g0399 206 FunFam Probable Ras-related protein Rab-6A 6 202 - -
Alju12g0399 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Alju12g0399 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 180 IPR027417 -
Alju12g0399 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Alju12g0399 206 SMART rho_sub_3 12 172 IPR001806 GO:0003924|GO:0005525
Alju12g0399 206 SMART ran_sub_2 15 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0399 Alju-ChrAlju12 4797240 4802184 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1905 09 42927814 42931000 Alju12g0399 12 4797240 4802184 CCT
Alju12g0399 12 4797240 4802184 Alju12g0399 12 4797240 4802184 ECH