Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju12g0115 ATGGCGTCCGCCACCAAGTGGTTCTCCAATACAGGTCTTAGACTAAGTCTTGGTCGCTCAAAGTCAAAAACCATATCAAGATCCTCCAACTCCTCAACCTCTGCCGTGTCATCACCACCTTCTGAAACCCCAAACCCTACTATCACCAGAGAGGATGAACTGAGGGAGGTGTTCCGTCGTTTCGACGGCAACGGCGACGGCAAAATATCGGCCCAAGAACTGAGGTCGTATTTCGGGTCCATTGGGGAGAACTTATCGCCGGAAGAGGCGGAAGGGGTGATCCGTGACCTTGATTCAGACGGAGACAGTCTTCTGGATATGAAAGATTTCATGAAGCTGATGAAGAAGGACGAAGATGACGAGGATCTGAAGAAGGCATTTGAGATGTTCGAGTGGGAAAAAGGGTCGGGTTGTATAACACCAAAAGGGTTGCAAAGGATGCTCCATCGTCTTGGAGACGACAAGTCGTACGATGAGTGTACGGCTATGATTAATGCCTTTGATGTAGATCGCAACGGAGTGCTAGATTTCAATGAGTTCCTCCAAATGATGGCCTAA 558 0.4875 MASATKWFSNTGLRLSLGRSKSKTISRSSNSSTSAVSSPPSETPNPTITREDELREVFRRFDGNGDGKISAQELRSYFGSIGENLSPEEAEGVIRDLDSDGDSLLDMKDFMKLMKKDEDDEDLKKAFEMFEWEKGSGCITPKGLQRMLHRLGDDKSYDECTAMINAFDVDRNGVLDFNEFLQMMA 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju12g0115 185 CDD EFh 122 185 IPR002048 GO:0005509
Alju12g0115 185 Pfam EF-hand domain pair 136 184 IPR002048 GO:0005509
Alju12g0115 185 SUPERFAMILY EF-hand 40 184 IPR011992 -
Alju12g0115 185 FunFam Calmodulin 1 42 117 - -
Alju12g0115 185 MobiDBLite consensus disorder prediction 18 47 - -
Alju12g0115 185 Gene3D - 16 118 - -
Alju12g0115 185 Gene3D - 119 185 - -
Alju12g0115 185 ProSitePatterns EF-hand calcium-binding domain. 168 180 IPR018247 -
Alju12g0115 185 ProSiteProfiles EF-hand calcium-binding domain profile. 85 120 IPR002048 GO:0005509
Alju12g0115 185 SMART efh_1 159 185 IPR002048 GO:0005509
Alju12g0115 185 SMART efh_1 53 81 IPR002048 GO:0005509
Alju12g0115 185 SMART efh_1 89 117 IPR002048 GO:0005509
Alju12g0115 185 Pfam EF-hand domain pair 52 115 IPR002048 GO:0005509
Alju12g0115 185 ProSitePatterns EF-hand calcium-binding domain. 62 74 IPR018247 -
Alju12g0115 185 ProSiteProfiles EF-hand calcium-binding domain profile. 49 84 IPR002048 GO:0005509
Alju12g0115 185 MobiDBLite consensus disorder prediction 18 53 - -
Alju12g0115 185 PANTHER CALCIUM BINDING PROTEIN 105 184 - -
Alju12g0115 185 CDD EFh 53 115 IPR002048 GO:0005509
Alju12g0115 185 ProSiteProfiles EF-hand calcium-binding domain profile. 155 185 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju12g0115 Alju-ChrAlju12 1425942 1426499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju12g0115 2 185 EF-hand Containing Proteins AT3G50770 47.208 6.63e-56 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju12g0115 12 1425942 1426499 Alju12g0115 12 1425942 1426499 ECH