Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g1972 ATGGATGGGTATGAAGCTACAAGAATTGTTTTCTCACGGATCCAAAACTTGGACCCTGAGAATGCTTCCAAAATCATGGGTCTACTTCTGATTCAAGACCATGGTGAGAAAGAAATGATTAGATTAGCATTTGGTCCTGAAGCTCTGGTTCTCTCTGTGATTATTAAAGCTCGCAAAGACTTGGGATTATCCTCGTACTCTCCTTCTTCACCTTCAACTCCTCCATCTTCTTCTTCTTCTTCGTCACCACCATCTTTCCTTTCAAGGCAAATTTCTACTCCTTCAAGGTTAAGCAGCAGTGGAGTCAACTTTCCTCCTCCTGCTCTTACAATCCCAAACCCCTCTTCTTCAGTGCCTTGGGCTGATAATTTGATGAGTCCAAACAATAATTTACTTGTTGGCTCTAATTCTCCTCATATAAACCTTCCTTCACCATCTTCTTCCTTACTCTTTTATGGGTCTGATCCAATTGATGAGTTTCAGCTTCAAGACCAGCTTTCTTTCCTTAATGATGGGTCTCCTACTCTTGCCAGGAAAAACCCAGATTTGTTCTATCCTCAGTCTGACTTATCTTCGAGTCCTACCGGCGGCGGCGCTACCGTCTTTCCCTCTTACGGGTGGGGCGGGCCGGTCCATCGCCGGAGTTGCTCCGTTAATGAGGCTTGTTTGGGGTCTGAGGATCCCAACTCTGGGTTTGGTTGGAAGCCTTGTCTTTACTTTGCTAGAGGGTATTGCAAAAACGGTACTAGCTGTAGGTTCCTTCATGGAGGAGGAATTGGAGATCCTGATGGCGTTTCAATGGTTGGGTCTCCTAGTAAGATTGAGATGTTGGAGCAGAGCAACAACCATGAGCTTCTCAGATCTAAAACTGCTCAACAGCAAAGATTGCTCATGGCTTCTTCTTTGCCTTACTCTCCAAAGGGCATGAATTTTCTACTTCAACAGCAGCAAAATGATACGCAGAGAGCTGCAACTGCACTTATGATGAACGAGGATATGCACAAGTTTGGACGATCCAGGTTTGAAAGAAACGATTTTTCACTCAATGGATGTTCTGGAATAGGAAACCCAGCTTCAAGGCAGATCTACTTGACCTTTCCAGCTGATAGTACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGTCCTGTTCAAGATGTGAGAATTCCATATCAGCAGAAACGTATGTTTGGATTTGTGACCTTTGTTTATCCAGAGACTGTGAAGCTCATTCTTTCCAAGGGAAATCCCCATTTTGTTTGTGATGCTCGTGTGCTAGTCAAGCCTTACAAGGAAAAAGGCAAAGTCCCAGACAAGAAACAAGTCGAAAGGGGTGATTTCTCACCTTGTGGTACTCCTACTGGACTTGATGCTAGAGATCCATTTGATCTTCAACTTGGAGGGAGAATGTACTATAATACTCAAGATATGCTGTGGAGGAGGAAGTTGGAGGAGCAAACTGATTTTCAACAAGCTCTTGAGCTCCAAAGTAGGAGACTCATGGGTCTGCAACTTCTTGACATCAAGAAGCAGCACCAGAGGGCATTTTCAACAGGAAGCCCAATTCCTTCCCCTACTCAATCTCCCAACATGTTCAATCAGAATCTTGTTCTTCCTTCATTCCGTCGTGGTGGCAGCCCGGAGGCTTCTCTAGAGGAGAGTGTTTTGAGCTCTGTTCCTCCTAGCACGGCACCGATTTCTGTTGTTCAGCAGCCACCAATGCAGCCAAAGACTGTAATTTTCAAGAATGTTTGGAGCATAACCTCCCAGATAGCCCTTTCGCTTCTCCTACAAAAGCTGCTGGAGACTACAAGGCTGCCTTCTCCAATGGAGGACCTAACGACGCTATTGATTCGGATGGCTCAGCTGCATCTACTAACTCTGAATTTGGTACCACAAGTGCATTTCTTCCAGCACCAACTTCTCTTGACATGGGATCTTTCAAGTCCTTTAACTGTCAAATACCAAGGTTTTCTTCTGGCCATGGAAACATTGAGATGTTTGCCGGCAAGGGGGGACCCATCGCCATTTAGCATCCCTAGCTTCAGGAAGAGAGAAGTAATGGACCAAAGAGGACCAGGAACAGCAATCAAATCTGTAGAGAATCATCACCACCAAGCCCATCAACATCATCATCAATACTATACTCCTTACTACCATACAAAATGCATACGTAAAAAGCAGTTTAGTAAAGGAAGTGGGACAGCCATTCCTTGTTCTTTCATTGTCATTATTGTACCATTGTCCATCTTTCTCATCTCTCATTTTCTGTAG 2283 0.4433 MDGYEATRIVFSRIQNLDPENASKIMGLLLIQDHGEKEMIRLAFGPEALVLSVIIKARKDLGLSSYSPSSPSTPPSSSSSSSPPSFLSRQISTPSRLSSSGVNFPPPALTIPNPSSSVPWADNLMSPNNNLLVGSNSPHINLPSPSSSLLFYGSDPIDEFQLQDQLSFLNDGSPTLARKNPDLFYPQSDLSSSPTGGGATVFPSYGWGGPVHRRSCSVNEACLGSEDPNSGFGWKPCLYFARGYCKNGTSCRFLHGGGIGDPDGVSMVGSPSKIEMLEQSNNHELLRSKTAQQQRLLMASSLPYSPKGMNFLLQQQQNDTQRAATALMMNEDMHKFGRSRFERNDFSLNGCSGIGNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQVERGDFSPCGTPTGLDARDPFDLQLGGRMYYNTQDMLWRRKLEEQTDFQQALELQSRRLMGLQLLDIKKQHQRAFSTGSPIPSPTQSPNMFNQNLVLPSFRRGGSPEASLEESVLSSVPPSTAPISVVQQPPMQPKTVIFKNVWSITSQIALSLLLQKLLETTRLPSPMEDLTTLLIRMAQLHLLTLNLVPQVHFFQHQLLLTWDLSSPLTVKYQGFLLAMETLRCLPARGDPSPFSIPSFRKREVMDQRGPGTAIKSVENHHHQAHQHHHQYYTPYYHTKCIRKKQFSKGSGTAIPCSFIVIIVPLSIFLISHFL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g1972 760 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 360 436 IPR000504 GO:0003723
Alju10g1972 760 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 236 256 IPR000571 GO:0046872
Alju10g1972 760 Gene3D - 225 292 - -
Alju10g1972 760 SUPERFAMILY CCCH zinc finger 234 256 IPR036855 GO:0046872
Alju10g1972 760 SMART c3hfinal6 233 257 IPR000571 GO:0046872
Alju10g1972 760 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 367 438 - -
Alju10g1972 760 Gene3D - 293 449 IPR012677 -
Alju10g1972 760 ProSiteProfiles Zinc finger C3H1-type profile. 231 258 IPR000571 GO:0046872
Alju10g1972 760 SMART rrm1_1 361 431 IPR000504 GO:0003723
Alju10g1972 760 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 372 417 IPR000504 GO:0003723
Alju10g1972 760 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 549 - -
Alju10g1972 760 SUPERFAMILY RNA-binding domain, RBD 372 450 IPR035979 GO:0003676
Alju10g1972 760 CDD RRM_AtC3H46_like 362 431 IPR034365 -
Alju10g1972 760 MobiDBLite consensus disorder prediction 64 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g1972 Alju-ChrAlju10 38648305 38651661 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g1972 10 38648305 38651661 Alju10g1972 10 38648305 38651661 ECH