Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0471 ATGGCGATTCTTTACGCTTTGGTGGCAAGAGGTACGGTGGTGCTGGCGGAATTCAGCGCCGTCACCGGCAATACAGGCGCCGTGGCTCGCCGGATCCTGGAAAAGCTTCCGGATGAAGCCGATTCTAGGTTGTGCTTCTCTCAGGATCGTTATATCTTTCACATACTGCGATCCGATGGCCTAACCTACCTCTGTATGGCCAACGACACCTTTGGAAGGAGAATTCCTTTTACTTACTTGGAAGATATTCAAATGAGGTTTATGAAGAATTACAGCAGAGTGGCCCTTTATGCACCAGCTTATGCAATGAACGATGAGTTTTCTAGGGTTTTACATCAGCAAATGGAATTTTTTTCAAGTAGTTCTAGTGCAGATACTCTCAACCGCGTGAGGAGCGAAATTCGCACTATCATGGTGGAAAATATTGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTGGATAAGACCGCAACAATGCAAGACAGTGCGTTTCACTTTAGGAAACAGTCCAAGCGCCTCCGAAGAGCTCTTTGGATGAAGAATGCCAAACTCTTGGCATTGTTGACATTGTTGATCGTTCTGTTTCTTTACTTCATAATTGCTGCTTGCTGTGGAGGCATCACTTTACCGTCATGCAGATCTTGA 654 0.4557 MAILYALVARGTVVLAEFSAVTGNTGAVARRILEKLPDEADSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFTYLEDIQMRFMKNYSRVALYAPAYAMNDEFSRVLHQQMEFFSSSSSADTLNRVRSEIRTIMVENIEKILERGDRIELLVDKTATMQDSAFHFRKQSKRLRRALWMKNAKLLALLTLLIVLFLYFIIAACCGGITLPSCRS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0471 217 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 123 183 IPR042855 -
Alju10g0471 217 Pfam Synaptobrevin 127 208 IPR042855 -
Alju10g0471 217 FunFam Vesicle-associated membrane protein 7 124 206 - -
Alju10g0471 217 Gene3D - 124 206 - -
Alju10g0471 217 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Alju10g0471 217 CDD R-SNARE 125 181 - -
Alju10g0471 217 Gene3D Longin domain 1 123 - -
Alju10g0471 217 PANTHER SNARE PROTEINS 1 203 - -
Alju10g0471 217 FunFam Vesicle-associated membrane protein 714 1 124 - -
Alju10g0471 217 PRINTS Synaptobrevin signature 184 203 IPR001388 GO:0016020|GO:0016192
Alju10g0471 217 PRINTS Synaptobrevin signature 148 167 IPR001388 GO:0016020|GO:0016192
Alju10g0471 217 PRINTS Synaptobrevin signature 128 147 IPR001388 GO:0016020|GO:0016192
Alju10g0471 217 SMART Longin_2 28 110 IPR010908 -
Alju10g0471 217 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Alju10g0471 217 CDD Longin 4 118 IPR010908 -
Alju10g0471 217 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Alju10g0471 217 ProSitePatterns Synaptobrevin signature. 141 160 IPR001388 GO:0016020|GO:0016192
Alju10g0471 217 SUPERFAMILY SNARE fusion complex 128 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0471 Alju-ChrAlju10 3815753 3818490 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0471 1 217 Miscellaneous Gene Families AT5G22360 84.615 1.10e-138 385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0471 10 3815753 3818490 Alju10g0471 10 3815753 3818490 ECH