Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0387 ATGGCTCCTTTTCCGTCTGAGAACGGCGTTGAAGGAGACGATGGAAGAGAGGAGAACGACGAGGAAGAAGAAGAAGAGGATGAGGAGGAGGAGCCGAGACTTAAGTACCAGAGAGTGGGAGGCAGCATACCTTCGCTGCTAGCCAGTGACGCGGCGTCGTGTGTCGCTGTTGCCGAGCGGATGATCGCCATTGGCACTCATTGTGGCACCGTCCATATCCTTGATTTTCTTGGGAATCAGGTGAAAGAATTTGTTGCTCATGCTGCTGTTGTTAATGACCTTAGCTTTGACCTAGAGGGTGAATATATTGGAAGCTGTTCTGATGATGGATCCGTGGTAATAAACAGCCTGTTTACTGGTGAGAAAATGAAAATTGAGTATCGTCGTCCAATGAAGGCTATTGCTCTGGACCCAAACTATGCGAGAAAAGCATCAAGGAGATTTGTTGCAGGTGGTTTAGCTGGCCATTTATGTCTTAATTCAAAGACATGGTTAGGCTATCGTGATCAGGTTTTGCACTCTGGTGAGGGTCCAATACATGCTGTGAAGTGGAGAACAAGTCTTGTTGCTTGGGCCAATGATGCAGGAGTGAAGGTTTATGATGCAGCCAATGATCAGCGTGTGACATTTATTGAAAAACCACGAGGGAGCCCACACCCTGAGCTTCTGCTTCCTCACTTGGTTTGGCAGGATGATACCCTCTTGGTGATAGCTTGGGGAACATCTATCAAAATTGTATCAATAAGAACAAATCTCTATGAAGCAGTCAATGGGATGAACAGGCCAGCCCCAATATCTAGTAGGAACCAGGTGGATGTTGTGGCATCTTTTCAAACCACCTATTTAATCTCAGGAATTTCCCCATTTGGTGATGCTTTGGTTGTTCTTGCTTATATTCCTGGAGAAGATGGAGAACAGGATTTTAGTGGCACTGCTCTTTCTCAGAAGGGCAATGCACAACGACCAGAAGTGCACGTAGTAACACGGAACAATGATGAACTTTCAACAGATGCTCTACCATTACATGGCTTTGAGCATTTCAAGGCAAATGATTATTCCATTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAATGGGCTGCAGGTGATGAACCTCTTTACTACATTATGTCCCCAAAAGATGTAGTCATTGCAAAGCCAAGGGATACTGAAGATCACATTGCATGGCTTCTTCAACATGGGTGGCATGAAAAAGCCTTGGCTGTAGTTGAATCTGGTCAAGGAAGGAGTGAACTTCTTGATGAGGTTGGATCCAGTTACCTTGATCATTTAATTATGGAAAGAAAATATTCTGAAGCAGCTTCTTTGTGTCCCAAGTTGCTGCGAGGGTCAGCTTCAGCATGGGAAAGATGGGTTTTCCACTTTGCACACCTTCGTCAACTTCCTGTAATGGTCCCCTATATGCCTACTGAAAACCCTAGACTGCGAGATACTGCTTATGAGGTCGCTCTTGTTGCATTGGCTACAAATCCATCCTTTCACAGGGATCTCTTGTCCATTGTCAAATCCTGGCCTTCTGTAATTTATAGTGCATTGCCTGTTATTTCAGCCATTGAACCTCAGCTCAATACTTCATCCATGACTGATGCACTCAAGGAGGCATTGGCTGAGTTATATGTAATCAACGGGCAATACGAGGAAGCCTTTTCATTGTATGCTGATCTTATGAACCCAGAAATATTTGACTTCATTGATAAACATAATCTACATGAAGCAGTCCAAGAAAAGGTTGTCCAACTGATGATGCTAGATTGCAAGCGTGCAGTTGCTCTATTCATTCAAAACAGGGACTTTATAAGTTCAACTGAAGTTGTGAAGCAACTTCTAAATGCTGATAATAAGCGTGAGTGCAGATATTTTCTACATTTATACCTTCATTCATTATTTGAAGTAAACCCACATGCTGGGAAGGAATTCCACGATATGCAGGTAGAACTTTACGCAGATTATGACCCAAAGATGCTGCTACCATTTCTTCGCAGTAGTCAACACTATACCCTTGAGAAGGCCCATGAAATTTGCATCGAAAGAGATCTATTGAGGGAGCAAGTCTTCATCCTAGGAAGGATGGGAAACTCAAAACAAGCCCTATCTATTATTATTGACCAATTAGGGGATATAGAGGAGGCAGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAACTGATCAAGCAATGCCTACACAAACCTGAAATGGTGGGCATCCTATTGGAACACACCGTTGGGAATCTTGATCCCCTCTACATAGTAAACAAGGTTCCCAATGGGATGGAAATACCTCGACTTAGGGATCGGCTGGTTAAAATCATCACCGATTACAGGACAGAAACATCACTCAGACATGGGTGCAATGATATCCTGAAGGCCGACTGTGTCAACCTATTAGTTAAGTATTGCAAAGAGGCGAGGCATGGAGTTTATCTAAGTAATGAGGCCGAGCCACGGGCTAAAAGAAGTGAAAATCATTATTCTCAGGTGGTTGAAAAATCTACAGTTTTGAGAAACGTTGAAGTGAAGTCGAAGAACAGGGGAGGTGGAAGATGTTGTATATGTTTTGACCCTTTTTCAATTCAGAATGTGTCAGACTCGTTCGTTATTTTCTTTTGCTGTCATGCCTATCACACAACTTGTCTAATGGATTCAAGTGACACCAGCAGCAGCAATAAAGAGATTGAAGTCACCTATGGAAAGGCAGAACATTATGATTATAATAGTTATGTGGATGAAGAAGAATCTGAGAGGGATGATCATCGTATGCGTTGTGTATTATGTACTACTGCTACCAGTTGA 2832 0.4319 MAPFPSENGVEGDDGREENDEEEEEEDEEEEPRLKYQRVGGSIPSLLASDAASCVAVAERMIAIGTHCGTVHILDFLGNQVKEFVAHAAVVNDLSFDLEGEYIGSCSDDGSVVINSLFTGEKMKIEYRRPMKAIALDPNYARKASRRFVAGGLAGHLCLNSKTWLGYRDQVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDAANDQRVTFIEKPRGSPHPELLLPHLVWQDDTLLVIAWGTSIKIVSIRTNLYEAVNGMNRPAPISSRNQVDVVASFQTTYLISGISPFGDALVVLAYIPGEDGEQDFSGTALSQKGNAQRPEVHVVTRNNDELSTDALPLHGFEHFKANDYSIAHAPFSGSSYAGGQWAAGDEPLYYIMSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSSYLDHLIMERKYSEAASLCPKLLRGSASAWERWVFHFAHLRQLPVMVPYMPTENPRLRDTAYEVALVALATNPSFHRDLLSIVKSWPSVIYSALPVISAIEPQLNTSSMTDALKEALAELYVINGQYEEAFSLYADLMNPEIFDFIDKHNLHEAVQEKVVQLMMLDCKRAVALFIQNRDFISSTEVVKQLLNADNKRECRYFLHLYLHSLFEVNPHAGKEFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAHEICIERDLLREQVFILGRMGNSKQALSIIIDQLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGMEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLVKYCKEARHGVYLSNEAEPRAKRSENHYSQVVEKSTVLRNVEVKSKNRGGGRCCICFDPFSIQNVSDSFVIFFCCHAYHTTCLMDSSDTSSSNKEIEVTYGKAEHYDYNSYVDEEESERDDHRMRCVLCTTATS 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0387 943 CDD RING-H2_Vps8 860 896 - -
Alju10g0387 943 Pfam Region in Clathrin and VPS 604 745 IPR000547 GO:0006886|GO:0016192
Alju10g0387 943 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 602 749 IPR000547 GO:0006886|GO:0016192
Alju10g0387 943 SUPERFAMILY WD40 repeat-like 49 251 IPR036322 GO:0005515
Alju10g0387 943 SMART CLH_2 602 749 IPR000547 GO:0006886|GO:0016192
Alju10g0387 943 PIRSF Vps41 5 905 IPR016902 GO:0034058|GO:0046907
Alju10g0387 943 MobiDBLite consensus disorder prediction 1 36 - -
Alju10g0387 943 SUPERFAMILY RING/U-box 861 901 - -
Alju10g0387 943 Gene3D Tetratricopeptide repeat domain 533 808 IPR011990 GO:0005515
Alju10g0387 943 MobiDBLite consensus disorder prediction 13 30 - -
Alju10g0387 943 PANTHER VACUOLAR PROTEIN SORTING VPS41 19 938 IPR045111 GO:0006623
Alju10g0387 943 Gene3D - 48 290 IPR015943 GO:0005515
Alju10g0387 943 FunFam Vacuolar protein sorting-associated protein 41 homolog 543 808 - -
Alju10g0387 943 FunFam Vacuolar protein sorting-associated protein 41 homolog 5 275 - -
Alju10g0387 943 SMART WD40_4 77 116 IPR001680 GO:0005515
Alju10g0387 943 SMART WD40_4 165 201 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0387 Alju-ChrAlju10 3095545 3102833 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0387 10 3095545 3102833 Alju10g0387 10 3095545 3102833 ECH