Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0261 ATGTATTATTTTGGTAGAAATTGCTCGAAACATGGTAGCTTCTCCATGAGAAACTTTTTGAATCATCTATGCTTTGCAAACTCATTTGGGCAGAGATTTCATGAATCAGCTGTGCTCAATAGTCCCATTGTACAAAATTCTAGGAAGATTACTCTTTATGAGACTGATAAAATTGAACCCTTTTTCCAAATTTCTTATAAAACAACTCCAGCCCCGCGTGCACCCTCTTTTGTTGCTTCTCATTATTCAACCAAGCCACCTTCAAGGTCGTTTCGAAGAAGAGCTCGTAAGAGACTGTTAAAATCCTTGAAGCCTACTCTAGATCATGCCCAATTTCAATCAGCCTTGTCCCAACTATCCCCAAGGTTCACTCCTGAAGAACTCTGTAATGTTATTACTTTTCAAGAAGACCCATTAGTTTGCTTGGAGCTCTTTAATTGGGCATCACAACAACCCAGGTTTCGGCACAACGCCACCACATATCACATAACCATCCAGAAGCTCGGTGCCGCACAAATGTACCAAGAAATGGATGATATTGTCAATCAGGTGCTTGCAGTTCCATTAATTTGTTCAGAGGCACTTTACAATACTATAATATATTATTTCACAGAAGCTCGAAAGTTGACTCGAGCTGTCAATATATTTAACCACTTGAAAAGTAGCAGAAATTCGAATTGCAAGCCTTCTATCAGAACCTACAATATCCTTTTTGCGGCACTGTTGAGCAGAGGAAGCAACTCCTATATAAATCGTGCTTATATGGACACTATTAGATGCCTGTTTAAGCAAATGGTCAATGATGGGATACAGCCCGATATATTTTCTTTAAATTCCATGATTAAAGGTTATGTGCTTTCTCTCCATGTTAATGATGCGCTGAGGATATTCCATCAGATGGGTGTGGTTTATGCTTGCAAGCCTAACTCATTTACCTATGATTATTTGATACACGGCCTGTGTGCGCAAGGAAGAACGAAGAATGCTAAAGAGATATGCGATGAAATGAAGACTGAAGGCTTAACCCCAAGTAGCAAATCTTATAATTCACTTGTCAATGCTTTGGCACTTGGTGGAGAGATTGAGGAAGCGGTAAAATATCTGTGGGAGATGACTGAAAATCAGAGGTCGGCTGATATTATTACATATAGAACTGTACTGGATGAGATATGTAGACAAGGAAGAGTTCAGGAGGCAATGAGGTTATTGCAGCACTTTCAACAGAAGGACCTTGTGGATGGGCATGCTTACAGGAAACTTCTGTGTGTGCTGGAGGATGATTATGGGAATTCAGTTGGCAGAGTTGATCCAGGAGTATTCCACGACAACACTGTTGCTCATGGCAGGGTCCGATAA 1356 0.4041 MYYFGRNCSKHGSFSMRNFLNHLCFANSFGQRFHESAVLNSPIVQNSRKITLYETDKIEPFFQISYKTTPAPRAPSFVASHYSTKPPSRSFRRRARKRLLKSLKPTLDHAQFQSALSQLSPRFTPEELCNVITFQEDPLVCLELFNWASQQPRFRHNATTYHITIQKLGAAQMYQEMDDIVNQVLAVPLICSEALYNTIIYYFTEARKLTRAVNIFNHLKSSRNSNCKPSIRTYNILFAALLSRGSNSYINRAYMDTIRCLFKQMVNDGIQPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVVYACKPNSFTYDYLIHGLCAQGRTKNAKEICDEMKTEGLTPSSKSYNSLVNALALGGEIEEAVKYLWEMTENQRSADIITYRTVLDEICRQGRVQEAMRLLQHFQQKDLVDGHAYRKLLCVLEDDYGNSVGRVDPGVFHDNTVAHGRVR 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0261 451 Pfam PPR repeat family 308 356 IPR002885 -
Alju10g0261 451 NCBIfam pentatricopeptide repeat 311 344 IPR002885 -
Alju10g0261 451 NCBIfam pentatricopeptide repeat 276 309 IPR002885 -
Alju10g0261 451 Gene3D Tetratricopeptide repeat domain 246 338 IPR011990 GO:0005515
Alju10g0261 451 Gene3D Tetratricopeptide repeat domain 95 245 IPR011990 GO:0005515
Alju10g0261 451 Gene3D Tetratricopeptide repeat domain 339 411 IPR011990 GO:0005515
Alju10g0261 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Alju10g0261 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Alju10g0261 451 PANTHER ATPASE EXPRESSION PROTEIN 3 101 421 - -
Alju10g0261 451 Pfam PPR repeat 381 409 IPR002885 -
Alju10g0261 451 Pfam PPR repeat 276 300 IPR002885 -
Alju10g0261 451 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Alju10g0261 451 Pfam Pentatricopeptide repeat domain 196 239 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0261 Alju-ChrAlju10 2049462 2051464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju10g0261 232 421 Glycosyltransferase AT1G05670 23.958 1.45e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0261 10 2049462 2051464 Alju10g0261 10 2049462 2051464 ECH