Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju10g0230 ATGGTGGATGATGGGTGCTCTGCAATTCCGTTGCCGAATGGGATGGAAGAGAAAAGGGATCTCTCTCCTCTCCCCACCCTCAAACCAAACACACCCTACGAGACGCGCCCTCGTCCCCTCCTCACCTTACACTGTTCTTCTTCACTAAGGTCGCTGCCACTATCGCCGAACACAGCCACCGCCACCGATCGCTGCTTCGACGATATAAGGAGAAAGATGTATAGAGCACGAGCTGAAGGCCTAACCTTCACGAAGGAACCATATATTGAAGATGTTGGACCGCGCAGAATCAAGAACATGCAATTCACTGCGTTATCAGAGTCAGAGATCAGTAGAATTGCTGAGGTTCAAGTTGCAAAAGGTTCATACTATGACGAGAGAAGAAAGCCAATTGAGAATGGCTTGTTGGATCCCCACATGGGTCCTGCTAATAAGAGTTGCACGTGTGCAACATGCCATGGGAGTTTTGTTGACTGTCCAGGGCACTACGGATACTTAAACCTTGCTCTTCCAGTTTTCAATGTTGGATATAAAGAAAAAATTTTGCAAATATTGAAGTGCATTTGTAAGGGCTGTGCTCGTATACTCCTTGATGAAAATTCTTGTAAAGAACGCTTGAAGAAGATGAGAAGCCCCAAGATAGAGCCTTTGAGGAAGATTGCAATAGCCAAAAGTCTTATTGATAAATGCAGTGCCATGACAAGTAGCAAAACAGTGAAGTGTCTAAGATGTGGATTTATCAATGGTCCAGTGAAGAAGCTTGTGTCTAATTTAGGCATTATTCATGATACTTCAAAATGTATTGATGGCATTGAGAAAGATTTAAAATCAGCAGTTTCTACAAGAGAGTCTGCTTCCACCAACTCAGCTACTTATGTTCTAAACCCTCACAGAGTTCTTTCCCTCTTCAAAAAGATGCTTGATGAGGACTGTGAATTACTTGATCTTGCAGACAGACCCGAGAAATTCATTATAACGAACATGGCTGTACCACCCATAGCTATTCGACCTTCAGTTATAATGGATGGTTCCCAGAGCAATGAAAATGATGCAACAGAGAGGCTAAGGCAAATAATTCAAGCAAATGCTAACCTTCGCCATGAGTTGCAAGAAGCTAGCGGGGCATTCAAATCTCTGGATGGCTGGGAAATACTTCAAGTTGAGGCTGCTCAATTCATAAATAGTGATGTGCGTGGCATTCCATTTAATATGCAACGCGCCAAGCCATTGGCTGGCTTTGTTCAACGCCTTAAAGGAAAGCAGGGACGTTTTCGTGGCAACTTATCAGGGAAACGTGTCGAGTTTACTGGCAGGACAGTCATTTCACCGGATCCTAATCTGAAAATTTCTGAGGTCGCAATACCAATCCACATGGCTCGTATATTGACTTTTCCTGAGTGTGTTTCCCCTCACAACATTGAGAAGTTGAGACAGTGTGTGAGAAACGGCCCTGATAAGTATCCTGGTGCAAGGTTGCTTAGACATGCTGGCGGCACATCAAGGTCCTTAAAAGTTTCATTTCGGAAACGCCTTGCTGATGAATTGAGGTATGGTGATATTGTTGATCGTCATTTGGAAGATGGAGACATAGTTCTTTTCAATAGACAACCAAGCTTGCATCGGATGTCTATCATGTGTCACAGGGCTAGAGTTATGCCATGGAGAACTCTGAGATTCAACGAATCAGTCTGCAACCCATATAATGCTGACTTTGATGGTGATGAGATGAATTTACATGTCCCGCAAACTGAGGAGGCACGGACAGAAGCCGTTTTATTGATGGGGGTGCCAAACAATTTATGCACACCAAAGAACGGGGAAATTCTGGTTGCCTCTACTCAAGACTTTTTAACCTCCTCATTTTTGATAACAAGAAAAGATACGTTTTATGATCGTTCTGCTTGTGCACTTATTTGCTCGTACATGGGTGATGCCATGGATATTGTTGATCTGCCAACTCCAGCAATTATAAAGCCAGTAGAGCTTTGGAGTGGGAAACAGATATTTAGTGTTCTAATACGCTCTCATGCAAATGTGAGGACCTATGTGAGTCTTACTGTTAAGGAGAAGACCTACAGCACAAAGCTTGATGACAGGAAAAGAGAGTTAAAAACAATGTGTCCTAATGATGGGTTTGTTTATTTTCGCAACAGTGAGTTGATATCTGGGCAACTTGGAAAGGTTACTTTAGGAAATGGAAATAAGGATGGACTTTTCTCGGTGTTACTTAGAGACTATAAAGCCCATGCTGCAGCCTCTTGCATGAACCGTCTAGCTAAGTTGAGTGCTCGATGGATAGGCAATCGTGGGTTCTCCATAGGCATTGATGATGTCCAACCAAAAGAGGAATTGATCAAAAAGAAAGATGAAACAATTTCAGATAACTACAGAAAATGTGATAATTTTATTGAGGCTTTCAATAAAGGAAAGCTAGAACTCAAAGCCGGTTGTGATCCTGCTCAAACATTGGAGGCTCTGATAACTAGTGTATTGAATGGCATTCGAGATACTGCAGGGAAGGTTTGCATGCAAACCTTGCACTGGAGAAATAGTCCCTTGATCATGTCACAGTGTGGCTCCAAAGGATCTCCTATAAATATCAGCCAAATGGTTGCGTGTGTTGGTCAACAGTCAGTTGGGGGTCGTCGTGCCCCCAATGGGTTCATGGAACGGAGTCTTCCTCATTTCCCAAGAAAAGCAAAGACCCCTGCAGCAAAAGGTTTTGTAGCCAATTCCTTTTATAGTGGATTGTCAGCTACTGAGTTTTTCTTCCATACAATGGGAGGGCGAGAAGGGCTTGTTGATACTGCGGTGAAAACTGCTGACACTGGTTATATGTCTCGCAGATTAATAAAAGCTCTGGAGGACTTGTTTGTCCACTATGATAACACTGTAAGAAACGCTAGTAGTTGTGTAGTCCAATTTTGCTATGGAGATGATGCCATGGATCCAGCTGGCATGGAAGGGAAAAATGGAAACCCTTTGAATTTTGAGCGGTTGTTTTTGAAAAGCAAGGCTATATGTCCCAGTAATGGAGATGATGAAATCCTATCCTCCTCTGATGTGTGTAAAGTAGTGCAAGACAAACTGTCAAAATTTGGTATGTTGAAAGAGAAAGGAGCTTCAGAAGATGATATAAGTTCTGAGGTGGGTTGCTCTGCGGACTTCATCAATGGCCTACAATCCTTCATCAGAGATAACATCAGAGTCTTACCAGAAAGAGATGAAACTTCTGTAGGTGATGACACTAGAAATCAGAAAAAATTTATTCAGAGGATATCTGGTATTACTAGTAGACAGCTAGAGGTTTTCTTGGATATATGTCTTTCTCGATATCGTTCAAAAAGAATTGAGGCTGGAACTCCAATTGGTGCCATTGGTGCGCAAAGTATTGGAGAGCCTGGGACACAGATGACTTTGAAAACTTTCCACTTTGCTGGAGTTGCAAGCATGAATGTTACTCTTGGAGTTCCACGTATCAAAGAAATAATAAATGGCGCCAAAAGAATCAGTACACCTATCATTACTGCAATTCTTGAGAGTGATGATAATGGTAATACTGCGAGGATGGTAAAAGGTCGCATTGAGAAAACAAACTTGGGCCAGATAGCAAAGGGAATAAAAATTGTGATGACATCAAAAGCAGCATCGATTGTTATCACACTGGACATGGAAATAATTCGAGGTGCACAATTGAATATAGATGCTAATATTGTAAGGGAATCCATCTTGCATGCTCCAAAATTAAAATTGAAGCCAGAGCACATTAAGGATTTGGATGTCGAAAAGCTTGTAATTGTACCCCAAGATGCAGATAGAAGTAAAATCAATTTTCAACTTAACTATCTAAAAAAATTGCTTCCATCAGTTGTAGTAAAGGGAATTAAGACTGCTGAACGTGTTGTTATCAGTAAAGAAGAAGATAAAGTGACAAAGATGGAGAAGTTCAAGTTGTTGGTAGAAGGCACGGGCCTTCAAGAGGTTATGGGCATTGAGGGGGTTAATGGACGTAAAACTCTTAGCAATCATATCATTGAAGTAGAGCAGACTCTAGGAATTGAAGCAGCTAGAAAGTGTATCATTGAGGAGATAAAGTTTACAATGGGAAGCCATGGAATGAGTATAGACATACGCCATATGATGCTTTTGGCTGATGTGATGACCTTCAGGGGTGAAGTCCTTGGAATAACAAGATTTGGAATCCAAAAGATGGACAAGAGTGTATTAATGCTAGCATCATTCGAGAAGACTGCAGATCACCTTTTCAATGCTTCTGTGCATGGGAGGGATGACCAGATTGAAGGAGTGACTGAATGCATAATCATGGGCACACCGATTCAGATAGGCACTGGAATGATCAAAGTTAAACAAAGATTGGATCCTCCAGCGCTGTGTCAGGGTGCCGATCCTATTCTGTCTTGA 4422 0.4193 MVDDGCSAIPLPNGMEEKRDLSPLPTLKPNTPYETRPRPLLTLHCSSSLRSLPLSPNTATATDRCFDDIRRKMYRARAEGLTFTKEPYIEDVGPRRIKNMQFTALSESEISRIAEVQVAKGSYYDERRKPIENGLLDPHMGPANKSCTCATCHGSFVDCPGHYGYLNLALPVFNVGYKEKILQILKCICKGCARILLDENSCKERLKKMRSPKIEPLRKIAIAKSLIDKCSAMTSSKTVKCLRCGFINGPVKKLVSNLGIIHDTSKCIDGIEKDLKSAVSTRESASTNSATYVLNPHRVLSLFKKMLDEDCELLDLADRPEKFIITNMAVPPIAIRPSVIMDGSQSNENDATERLRQIIQANANLRHELQEASGAFKSLDGWEILQVEAAQFINSDVRGIPFNMQRAKPLAGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKISEVAIPIHMARILTFPECVSPHNIEKLRQCVRNGPDKYPGARLLRHAGGTSRSLKVSFRKRLADELRYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAVLLMGVPNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSACALICSYMGDAMDIVDLPTPAIIKPVELWSGKQIFSVLIRSHANVRTYVSLTVKEKTYSTKLDDRKRELKTMCPNDGFVYFRNSELISGQLGKVTLGNGNKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNRGFSIGIDDVQPKEELIKKKDETISDNYRKCDNFIEAFNKGKLELKAGCDPAQTLEALITSVLNGIRDTAGKVCMQTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFMERSLPHFPRKAKTPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLFVHYDNTVRNASSCVVQFCYGDDAMDPAGMEGKNGNPLNFERLFLKSKAICPSNGDDEILSSSDVCKVVQDKLSKFGMLKEKGASEDDISSEVGCSADFINGLQSFIRDNIRVLPERDETSVGDDTRNQKKFIQRISGITSRQLEVFLDICLSRYRSKRIEAGTPIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAKRISTPIITAILESDDNGNTARMVKGRIEKTNLGQIAKGIKIVMTSKAASIVITLDMEIIRGAQLNIDANIVRESILHAPKLKLKPEHIKDLDVEKLVIVPQDADRSKINFQLNYLKKLLPSVVVKGIKTAERVVISKEEDKVTKMEKFKLLVEGTGLQEVMGIEGVNGRKTLSNHIIEVEQTLGIEAARKCIIEEIKFTMGSHGMSIDIRHMMLLADVMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVHGRDDQIEGVTECIIMGTPIQIGTGMIKVKQRLDPPALCQGADPILS 1473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju10g0230 1473 Gene3D - 421 603 - -
Alju10g0230 1473 Pfam RNA polymerase Rpb1, domain 2 430 596 IPR000722 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 FunFam DNA-directed RNA polymerase II subunit RPB1 505 603 - -
Alju10g0230 1473 Pfam RNA polymerase Rpb1, domain 4 804 909 IPR007083 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 Gene3D RNA polymerase ii 463 523 - -
Alju10g0230 1473 Coils Coil 348 375 - -
Alju10g0230 1473 Gene3D RNA polymerase Rpb1, domain 3 604 777 IPR042102 -
Alju10g0230 1473 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 89 1458 - -
Alju10g0230 1473 SMART rpolaneu7 321 624 IPR006592 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 Gene3D - 1406 1460 - -
Alju10g0230 1473 Pfam RNA polymerase Rpb1, domain 5 916 1408 IPR007081 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 Pfam RNA polymerase Rpb1, domain 3 599 778 IPR007066 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 Gene3D RNA polymerase II, clamp domain 87 210 IPR044893 -
Alju10g0230 1473 Pfam RNA polymerase Rpb1, domain 1 95 428 IPR007080 GO:0003677|GO:0003899|GO:0006351
Alju10g0230 1473 PANTHER DNA-DIRECTED RNA POLYMERASE 101 1457 IPR045867 GO:0003899|GO:0006351
Alju10g0230 1473 Gene3D - 896 954 - -
Alju10g0230 1473 FunFam DNA-directed RNA polymerase subunit 88 210 - -
Alju10g0230 1473 Gene3D - 955 1006 - -
Alju10g0230 1473 Gene3D - 778 895 IPR038120 -
Alju10g0230 1473 MobiDBLite consensus disorder prediction 1 36 - -
Alju10g0230 1473 FunFam DNA-directed RNA polymerase subunit 1408 1453 - -
Alju10g0230 1473 CDD RNAP_III_RPC1_N 105 966 IPR035697 -
Alju10g0230 1473 FunFam DNA-directed RNA polymerase subunit 604 777 - -
Alju10g0230 1473 FunFam DNA-directed RNA polymerase subunit 777 895 - -
Alju10g0230 1473 CDD RNAP_III_Rpc1_C 1111 1453 IPR035698 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju10g0230 Alju-ChrAlju10 1724914 1747228 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju10g0230 10 1724914 1747228 Alju10g0230 10 1724914 1747228 ECH