Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g2166 ATGGTATCCGAATCGGAGCTTATCGGCCGGCTCCGGGAATTTCTTCGCTGCTCCGACCTCAACACCACCACCACTGCTACGGTCCGCCGCCAGTTGGAGAAGGATTTTGGAATTGATTTATCGGATAGGAAGGCGTTCATCAGGGAACAGGTCGACTTGTTCCTTCAAAGCGAGCGCGAGCAACCCGAGGAACACGAAGAACCCGACGCTGAAGAAGATCAAAAGGACGAGCCTCAGCCGGAGCATGAATCAGAAGAAAGCGAAGATTCTAATGATGAAAATCAAGACGATGAAGAAGGGGATGAAGACACGGTAAAGCCTTCCAGGAATGGCAAGGACAAAAGACGATCTAAAACTTCAGGAAGTGAGGTGCGAAGAAAAGGTGGTGGTTTTTGCAAATTATGTAGCCTTTCTCCACAACTTCAGGAATTTGTTGGAGCACCAGAAATGGCAAGGACCGAGGTTGTTAAGCAATTATGGGCATACATAAGGGAGAAGAATTTGCAAGATGCAAATAACAGGAGGAATATAATTTGTGATGAACCATTACGTGCCCTTTTTAATGTTGATTCCATCAACATGTTTCAAATGAATAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCCGATGATGTCATCCAGGTGAAGTCTGCACCAAAGGAAAAACAAAAGAAGCAAGAGAGAGAAGAAGATCCAGATGAACCAAAAAGAAAGGAAAAACGACAGAAGGGAGGAAAATCAGGGTTTCTTGCTCCACTTCAACTGTCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAATGCATTATCACGCTCTGATGTCATAAAAAGAATGTGGGATTACATAAAAGGAAACAACCTTCAGGATCCTTCTGACAAGAGGAAAATAATCTGCGATGAGAAGCTGAAAGAACTCTTCGACGTTGACTCCTTCAACGGTTTCACAGTTTCGAAACTACTGGCTCCTCATTTCATAAAGGCAGAGCAGTGA 996 0.4408 MVSESELIGRLREFLRCSDLNTTTTATVRRQLEKDFGIDLSDRKAFIREQVDLFLQSEREQPEEHEEPDAEEDQKDEPQPEHESEESEDSNDENQDDEEGDEDTVKPSRNGKDKRRSKTSGSEVRRKGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWAYIREKNLQDANNRRNIICDEPLRALFNVDSINMFQMNKALSKHIWPLDSDDVIQVKSAPKEKQKKQEREEDPDEPKRKEKRQKGGKSGFLAPLQLSDALVNFLGTGENALSRSDVIKRMWDYIKGNNLQDPSDKRKIICDEKLKELFDVDSFNGFTVSKLLAPHFIKAEQ 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g2166 331 MobiDBLite consensus disorder prediction 218 249 - -
Alju09g2166 331 SUPERFAMILY SWIB/MDM2 domain 247 329 IPR036885 -
Alju09g2166 331 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Alju09g2166 331 SUPERFAMILY SWIB/MDM2 domain 127 209 IPR036885 -
Alju09g2166 331 Gene3D SWIB/MDM2 domain 125 213 IPR036885 -
Alju09g2166 331 MobiDBLite consensus disorder prediction 55 126 - -
Alju09g2166 331 MobiDBLite consensus disorder prediction 102 123 - -
Alju09g2166 331 SUPERFAMILY DEK C-terminal domain 3 56 - -
Alju09g2166 331 MobiDBLite consensus disorder prediction 82 101 - -
Alju09g2166 331 FunFam Upstream activation factor subunit 125 213 - -
Alju09g2166 331 Pfam DEK C terminal domain 2 55 IPR014876 -
Alju09g2166 331 CDD SWIB-MDM2_like 135 205 - -
Alju09g2166 331 SMART swib_2 131 210 IPR019835 -
Alju09g2166 331 SMART swib_2 250 331 IPR019835 -
Alju09g2166 331 Pfam SWIB/MDM2 domain 253 326 IPR003121 -
Alju09g2166 331 Pfam SWIB/MDM2 domain 134 205 IPR003121 -
Alju09g2166 331 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 210 - -
Alju09g2166 331 ProSiteProfiles SWIB/MDM2 domain profile. 130 207 IPR003121 -
Alju09g2166 331 CDD SWIB-MDM2_like 254 326 - -
Alju09g2166 331 ProSiteProfiles SWIB/MDM2 domain profile. 249 328 IPR003121 -
Alju09g2166 331 Gene3D SWIB/MDM2 domain 244 331 IPR036885 -
Alju09g2166 331 Gene3D - 1 58 - -
Alju09g2166 331 MobiDBLite consensus disorder prediction 218 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g2166 Alju-ChrAlju09 45087035 45091577 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Alju09g2166 SWIB 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g2166 09 45087035 45091577 Alju09g2166 09 45087035 45091577 ECH