LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju09g1469	ATGGCGATTGCTTCTCACCCGATTCCGAGTTTCTCACCTTCTTTCTGCTCCACTCGGACCCAATTCTCTCGCCTCTTGTGCTTCCCCTCCGTCACCCTGTCTCAGTCTCGCTCAAACCAAACTCGTTTATTAACTCGTCGATTTGTATCGTCTCGGCTCAATTCGTCTAAATTTTCCGATGCTGATGGCTCTGTCTCGCCGGGCAATGGAGATTTCCCATACGAACTCCAACATGATTTTTCACCTCAGCGTCAGAGGAGGGGATCGCCGGTATACGTCACGCTTCCGTTAGATTCCGTGGACGCGGAAGGGCGAGCCTTGAGGCAGAAAATTATGAAGGCCTCTTTCAGGGCGCTCGCATTTGCTGGAGTAGAAGGCGTGGTTTTGGAGATATGGTGGGGTTTAGTTGAGAGGAATGAGCCTATGGTTTATAATTGGCGAGGTTATTGCCAACTCGTCAAGCTGGCTGGGACGTTCGGCCTGAAGGTTCGAGTTGTCCTTGCGTTTCATCAGCGTGGCACGGACCCTACTGATCCTCATTGGATACCTCTTCCTCTATGGGTGCTTGATGAGATAAAAAAAGATCCAGATTTAGTATATTCAGATAGGTTTGGGACAAAAAGTGCTGAATACATCTCACTTGGATGTGATGCACTTCCTGTGCTCTGTGGACGATCTCCGATTCAGGCATATGCTGATTTTATGAGGAACTTCAGGGACACCTTCAGGCCTTACTTTGGCATTATCATAACAGGAATACAGATTGGCATGGGTCCTGGTGGTGAATTGAGATATCCTTTATGCCCTTCTCAATTAACCCATGACAGGCACTCTGAATTTGGAGAATTTCAGTGCTATGATAAGTATATGATTGCATCATTAAATGCTTGTGCAAGAGATATTGGAATGCCCGCATGGGGACAACGAGCTCCACGTGACACTGGAAGTTTGAGGCACAATTTGTTTTCTACTAGTGAGAATGGCAATGACCCTTGGAGCTCACCACAGGGTGAGTATCGCCCTTGGAACTTGCCAGAGGGTAGGTTTTTTCTCAAGTGGTACTCAGGGATGTTGCTTCTGCATGGAGAAAGAATTTGTAGGGAAGCTGAAACTATATTTAGAGGTACAGAAGTCAACATATCAGCAAAAGTGGCTGCTATTCACTGGCACTACCTGATTGATTCTTACCCATCAGAGTTAACCGCAGGATATTACAATACTTCTAAGAGGGATGGATACTTACCCATTGCTCGCATGCTTAGTAAGTATGGATTTGGCATATGCTGCTCAGGTTTTGAAATGCAAGATGCAGTAGTAAATAAGATAAACCCAGCTGGCAGCCCGGAAGGTTTTCTTAAGCAGCTGCTGTTGGCTGCTAGGCTCTGTGACATGCAACTTGAAGGTCAAAATTTTTCATCCAATTTAAATGATATATCATTCGAGCAGATGCTGAAGATGTCAAAGTTTTATACAGAAGGGGCTGAAAAGCGTCCCTTCTCTTTCAACTTTGTGAGGATGGGCAGGAAAATGTTTGAATCTCGTTTTTGGGACCGGTTTACTCGTTTCGTGAGGCAATTGTCAGATGGAAGTAATTTTCGAGCCAGACTAAATTCTGTTGGTGACGCACGTCACAGATCCTTGACCATGGCTAGGGCTGCAGAACCTGGATTGCTCTACAGGCACTGCTAA	1689	0.4589	MAIASHPIPSFSPSFCSTRTQFSRLLCFPSVTLSQSRSNQTRLLTRRFVSSRLNSSKFSDADGSVSPGNGDFPYELQHDFSPQRQRRGSPVYVTLPLDSVDAEGRALRQKIMKASFRALAFAGVEGVVLEIWWGLVERNEPMVYNWRGYCQLVKLAGTFGLKVRVVLAFHQRGTDPTDPHWIPLPLWVLDEIKKDPDLVYSDRFGTKSAEYISLGCDALPVLCGRSPIQAYADFMRNFRDTFRPYFGIIITGIQIGMGPGGELRYPLCPSQLTHDRHSEFGEFQCYDKYMIASLNACARDIGMPAWGQRAPRDTGSLRHNLFSTSENGNDPWSSPQGEYRPWNLPEGRFFLKWYSGMLLLHGERICREAETIFRGTEVNISAKVAAIHWHYLIDSYPSELTAGYYNTSKRDGYLPIARMLSKYGFGICCSGFEMQDAVVNKINPAGSPEGFLKQLLLAARLCDMQLEGQNFSSNLNDISFEQMLKMSKFYTEGAEKRPFSFNFVRMGRKMFESRFWDRFTRFVRQLSDGSNFRARLNSVGDARHRSLTMARAAEPGLLYRHC	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju09g1469	562	SUPERFAMILY	(Trans)glycosidases	88	537	IPR017853	-
	Alju09g1469	562	Pfam	Glycosyl hydrolase family 14	92	522	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	Gene3D	Glycosidases	80	555	-	-
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	413	436	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	395	406	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	342	361	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	123	137	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	378	394	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	166	187	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	144	162	IPR001554	GO:0000272\|GO:0016161
	Alju09g1469	562	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	39	533	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju09g1469	Alju-ChrAlju09	38710474	38713392	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju09g1469	90	554	Glycoside Hydrolase	AT4G17090	42.887	2.45e-132	395

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju09g1469	09	38710474	38713392	Alju09g1469	09	38710474	38713392	ECH