Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1298 ATGCCCGTCAAGGCCAGTCTTGGTGTCAAGCTAAATCCTTTTGGGGCACACTGTTTACATACCTCAACCATTGATTCCGGGCTAGTTTTGGAAGATTGGAACTTTAAAGTTAAACAAGGCTGCCGCGGCAGAGGGCTCGTGGAAGTTGCATTTCCAGTGGCTGGCTATGAGCCCTTTGAGATTAGTTTGGAGAGGCTTCCTTGGTGCTGCGAGTTGTGTATTGATGGGTGTATATTCATGTCGATAAGATGTGGAGTTGAGTCTGCTTTGCTCCACAGCAAAGTGTTCTCCTACCAACTACGGCTATTTAGATTGTATTATGCTGCTTCTTCGGCAGTGATGTTGGAAGACCATGTTTTTGATGAAAGTCCTAGGGTAGATTATGCCAATGTAATGGTCAATTTTGAAAGAAATAGTATGAGAGTTTCAAGTCTTAAAAGAAAGGGCAGATTATTTCCTATAGTGGTCTGGGTGATTAAAACCTCAAATTGGGAGACTGAACTTGTAAGAGATAGATTGTTCTGGAAAGCTGTAAGGCAGTATGGATTTTCCCATTCAATCACTTGCTTTAAAATTATTATTCACTTATATGCATCAGAAGGAATGCGTATGGAAGTATTTGCTTTGCTCAAAGATATTGTTGAATTCTGTTGGAAGGCCAAGTTTGAAACATTCAAATTGTTTTCAACTTTGTTAGATTCACCTCAGCATGTGGAACGATCGATTGTTGTGTATGACATATTAATAAAAGTACTTGCATCGTATAAGATGCTTGATGATGCATTTGACGTGTTCATGAGAATTAAGCACATGGGATTTGAAGCTGATGTATTTTCGTGCAATTTCTTGTTGAAATGCTTGGTGGAAAGAAATAGGGTGGAGTTGGTTGGAAAATTATTTCAAGAGTTAAAAGTCTCAGGCCCATCACCAAATATCTACACCTATACAATTATGATGAGCTTCTACTGTAGTGGAGATTGTGGGCAGGATGTAGATATTAACCAAGCTACTGCGATTTTTGAAGAAATATTGAGGAGTGGGGAAAACCCAACTGTTGTAACATATAGTATTTATATCCGTGGACTTTGCAAACTTGGTTCTGCTGCTGCTGCTCTGCGATTCATTCGTGAATGCAGGTATAGAAACCAGCCTCTCAATAGCTATTGTTTTAATGCTGTAATTTATGAATTTTGTCAAAGAGGTGCTGTTGATGAAGCTTTGCAAGTCTTGCAAGAAATGCGGAGCTCAGGGGTATTGCCTGATGCTTATAGCTACAGTATTTTAATCCATGCATTTTGTAAAAATGGGGATATTGATAAAGGTATTGACTTGATTGAGGAAATGGAAATTTATAATATAAAACCGTCCATAATTAGTTACACTTCCCTTATCTATGGTCTATGCAAGAGCAATCTGATGGAATTTTCAATGTGTGTGTTTCGGAATATTGGTGCTTCTGGATACAAATATGATCAGGCTGCTTATGAAACTCTGCTCAGTGGATTTTGCCGTCAAGGTGATATAGATTCTGCCAATAAGCTTTTGGAGGAGATGATTACAAATGAGCTGGCTCCTACTCCTTTTGCTTTCCAGAGTATAATCGGAGCGTTCTACAAACTGGGACTCTTAGACAAGGCATTGGAAGTTCTAAATTCCATGCTACAAGATGGTGTCTTGCCAAATACCATCACATGCAATTTTATTATCGATGGACTTTGTAGAGAAAGCCGTTTTGTGGAAGCTTTAACGCTACTGGATGAGTTCCAAGACCATGGAATTGACCTAAACTCTCATTCATATAACGCTGTCATCTACAGGCTTTGCAAAGGAAGCCATTTAGAAAGGGCATGGGAGCTCATTCCTAGAATGATGAAAAGGAATGTACTTCCAGGAGTTGTTAATTACACAACTCTCATAGATGCTTTTGCCAAACAATCTTATATAAAGAAGGCCTTATGGTTATACACAAAAATGCTCAAAGTTGGAGTCACTCCCAACACCATCACTTATACAGTCCTCATTAACATCTTTTGCCGTGTGGGCAAAATGCATGAAGCATTTATTTTTTTCAAGAAAATGGTAGAAGATGGGTTGAATCCAGATCAGATTTCATATACATCTTTAATAGCTGGCTTTTGTAGAACTGGAGATATGAGAAAGGCCTGGGTAGTATTCCAAGAAATGTTGAGGAAAGGCCTTTTGCCTGATGTATTTTCGTACACCTGTTTGATAGATGGGTTTTGCAAGTTAAACCGGATAGATACAGCCTCTCTTCTGTTTGATGAAATGAACAGAAAAGCAGTTGCTCCTAATGTTGTCACTTACACTGTTCTCATTGCTTGGTACCGTAAACATGGATATGCAGATCATGCACATAGGTTATATAATGAAATGAGGCTAAAGGGTATTTCACCAGATGATACAACTCATACTGTTCTTTTTAAAGGCGGCAGAGCAGAAGCTAAGGTTCCATAA 2475 0.3887 MPVKASLGVKLNPFGAHCLHTSTIDSGLVLEDWNFKVKQGCRGRGLVEVAFPVAGYEPFEISLERLPWCCELCIDGCIFMSIRCGVESALLHSKVFSYQLRLFRLYYAASSAVMLEDHVFDESPRVDYANVMVNFERNSMRVSSLKRKGRLFPIVVWVIKTSNWETELVRDRLFWKAVRQYGFSHSITCFKIIIHLYASEGMRMEVFALLKDIVEFCWKAKFETFKLFSTLLDSPQHVERSIVVYDILIKVLASYKMLDDAFDVFMRIKHMGFEADVFSCNFLLKCLVERNRVELVGKLFQELKVSGPSPNIYTYTIMMSFYCSGDCGQDVDINQATAIFEEILRSGENPTVVTYSIYIRGLCKLGSAAAALRFIRECRYRNQPLNSYCFNAVIYEFCQRGAVDEALQVLQEMRSSGVLPDAYSYSILIHAFCKNGDIDKGIDLIEEMEIYNIKPSIISYTSLIYGLCKSNLMEFSMCVFRNIGASGYKYDQAAYETLLSGFCRQGDIDSANKLLEEMITNELAPTPFAFQSIIGAFYKLGLLDKALEVLNSMLQDGVLPNTITCNFIIDGLCRESRFVEALTLLDEFQDHGIDLNSHSYNAVIYRLCKGSHLERAWELIPRMMKRNVLPGVVNYTTLIDAFAKQSYIKKALWLYTKMLKVGVTPNTITYTVLINIFCRVGKMHEAFIFFKKMVEDGLNPDQISYTSLIAGFCRTGDMRKAWVVFQEMLRKGLLPDVFSYTCLIDGFCKLNRIDTASLLFDEMNRKAVAPNVVTYTVLIAWYRKHGYADHAHRLYNEMRLKGISPDDTTHTVLFKGGRAEAKVP 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 735 823 IPR011990 GO:0005515
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 421 455 IPR002885 -
Alju09g1298 824 Pfam PPR repeat 487 518 IPR002885 -
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 303 449 IPR011990 GO:0005515
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 607 734 IPR011990 GO:0005515
Alju09g1298 824 Pfam PPR repeat 458 482 IPR002885 -
Alju09g1298 824 Pfam PPR repeat 529 558 IPR002885 -
Alju09g1298 824 Pfam PPR repeat 243 273 IPR002885 -
Alju09g1298 824 Pfam PPR repeat 353 379 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 350 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 666 700 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 701 735 IPR002885 -
Alju09g1298 824 SUPERFAMILY TPR-like 383 731 IPR011990 GO:0005515
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 521 592 IPR011990 GO:0005515
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 450 520 IPR011990 GO:0005515
Alju09g1298 824 Gene3D Tetratricopeptide repeat domain 158 302 IPR011990 GO:0005515
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 736 770 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Alju09g1298 824 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 478 821 - -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 560 609 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 276 324 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 386 434 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 700 749 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 770 816 IPR002885 -
Alju09g1298 824 Pfam PPR repeat family 630 679 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 771 805 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 529 562 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 388 422 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 563 596 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 243 277 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 668 701 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 773 806 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 703 737 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 598 630 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 494 526 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 738 771 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 635 667 IPR002885 -
Alju09g1298 824 NCBIfam pentatricopeptide repeat 423 456 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 596 630 IPR002885 -
Alju09g1298 824 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 631 665 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju09g1298 155 823 Glycosyltransferase AT1G05670 27.407 4.67e-82 276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1298 09 36657365 36659900 Alju09g1298 09 36657365 36659900 ECH