Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju09g1028 ATGGCCGAAGATAGCGTCGTTGAGTCTTGCGATTTGCCGGTGAAGAGGCCGAGGGAAGAAGAAGAAGAGAATGGGGTTTCTGCTTCTTCTGTCTCCATGGAGACAGACATTAATGGTGGCAAGCTTCCTGATTTTATGTCTTCAGTGATTCCTGGATGGTTCTCTGAAATTAGCTCAATGTGGCCTGGAGAGGCACACTCTTTAAAAGTTGAAGAGATCTTGTTTCAAGGGAAGTCTGATTACCAGAATGTGATGGTCTTCCAGTCATCATCATACGGAAAGGTTCTTGTTTTGGATGGTGTAATTCAGCTCACTGAAAGAGATGAATGTGCCTACCAGGAAATGATCGCACATCTTCCTCTGTGCTCAATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGGGGAGATGGTGGGGTCTTGCGGGAAGTCGCACGGCATTCTTCAGTCAAGAAGATAGACATTTGCGAAATTGACAAAATGGTTGTTGATGTCTCCAAACAATTTTTCCCTGAAGTAGCTGTAGGGTTTGATGATCCACGTGTGACGCTTCACATTGGTGATGGAGTCGCTTTTTTGAGAGATGTTCCAACAGGAACTTATGATGCAATCATAGTTGACTCATCTGACCCTATAGGTCCTGCTCAGGAGCTTTTTGAAAAACCCTTTTATGAGTTGGTTGCTAAGGCTCTTCGTCCTGGAGGAGTTGTGAGCACTCAGGCTGAAAGTATATGGCTTCATATGCATATTATTGAGGGCATTGTCGATAACTGTCGCCAGATATTTAAAGGCTCTGTCGAATATGCTTGGACTTCAGTTCCCACATACCCTAGTGGGATAATCGGTTTTATGCTTTGCTCGACCGAAGGACCTCCTGTTGATTTCAAGCATCCATTGAACTCCATAGATGCAAATTATGGTAATCAGAAATCAGTAAGCCCATTGAAGTTTTACAACTCTGAGATTCATGCGGCGGCATTTTGCCTTCCATCGTTTGCCAGGAGAGTGATTGATTCTAAAGCGAATGGAGAATAA 1035 0.4377 MAEDSVVESCDLPVKRPREEEEENGVSASSVSMETDINGGKLPDFMSSVIPGWFSEISSMWPGEAHSLKVEEILFQGKSDYQNVMVFQSSSYGKVLVLDGVIQLTERDECAYQEMIAHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSVKKIDICEIDKMVVDVSKQFFPEVAVGFDDPRVTLHIGDGVAFLRDVPTGTYDAIIVDSSDPIGPAQELFEKPFYELVAKALRPGGVVSTQAESIWLHMHIIEGIVDNCRQIFKGSVEYAWTSVPTYPSGIIGFMLCSTEGPPVDFKHPLNSIDANYGNQKSVSPLKFYNSEIHAAAFCLPSFARRVIDSKANGE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju09g1028 344 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 130 143 IPR030373 -
Alju09g1028 344 Pfam Spermidine synthase tetramerisation domain 52 106 IPR035246 -
Alju09g1028 344 MobiDBLite consensus disorder prediction 9 25 - -
Alju09g1028 344 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 49 338 IPR029063 -
Alju09g1028 344 PANTHER SPERMIDINE/SPERMINE SYNTHASE 44 340 IPR001045 GO:0003824
Alju09g1028 344 FunFam Spermidine synthase 1 104 342 - -
Alju09g1028 344 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 51 288 IPR030374 -
Alju09g1028 344 CDD AdoMet_MTases 129 237 - -
Alju09g1028 344 NCBIfam spermidine synthase 53 332 IPR001045 GO:0003824
Alju09g1028 344 FunFam Spermidine synthase 1 44 103 - -
Alju09g1028 344 MobiDBLite consensus disorder prediction 1 33 - -
Alju09g1028 344 Hamap Polyamine aminopropyltransferase [speE]. 52 338 IPR001045 GO:0003824
Alju09g1028 344 Pfam Spermine/spermidine synthase domain 109 296 - -
Alju09g1028 344 PIRSF Spermidine_synth 43 342 IPR030668 GO:0006595
Alju09g1028 344 Gene3D Vaccinia Virus protein VP39 104 342 IPR029063 -
Alju09g1028 344 Gene3D Spermidine synthase, tetramerisation domain 45 103 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju09g1028 Alju-ChrAlju09 32542043 32545113 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju09g1028 09 32542043 32545113 Alju12g1409 12 35336081 35339011 CCT
Alju09g1028 09 32542043 32545113 Alju09g1028 09 32542043 32545113 ECH